Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0268 ATGTCTAACACAAGCAACAATGTGGGTGGGGTTGATAACACATTCAGAAGAAAATTTGATCGAGAAGAGTATTTGGAACGAGCTCGTAAGCGTGAAAAGGAGGAAGAGGAAGGGTCTCGATCCAAATCTAAAGCTAAAGGTCCTCCCGTGCAGAGGAAACCCTTAAAACATAGAGATTATGAAGTGGACCTCGAATCCCGTTTGGGCAAGACTCAGGTTGTTACACCAATCGCACCACTAAGTCAGCAGGCTGGATACTACTGCTCAGTTTGTGAATGTGTAGTGAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGCGTAGAACGTGCTTCTCTTGATCAGGTTCGGGAACGATTTGAAGCTCTTAAGAAGCGAAAAGACCTTGGAAGTTTCACAGAGCAAGACCTGGATGACCGGATATTAAAACAGCAACAAGAAGAGGAGGAAAGAAAGCGAATACGCCGTGAAAAGAAAAAAGAAAAGAAGGAGAAGGCGGTTGAAGAACCTGAAATTGATCCTGATGTTGCAGCCATGATGGGGTTTGGTGGTTTCGGGTCATCCAAGAAGTGA 609 0.4417 MSNTSNNVGGVDNTFRRKFDREEYLERARKREKEEEEGSRSKSKAKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFEALKKRKDLGSFTEQDLDDRILKQQQEEEERKRIRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFGSSKK* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0268 202 MobiDBLite consensus disorder prediction 28 43 - -
Lan2g0268 202 SUPERFAMILY beta-beta-alpha zinc fingers 82 127 IPR036236 -
Lan2g0268 202 MobiDBLite consensus disorder prediction 151 202 - -
Lan2g0268 202 Pfam Zinc-finger of C2H2 type 86 110 - -
Lan2g0268 202 Gene3D Classic Zinc Finger 81 118 - -
Lan2g0268 202 Coils Coil 118 138 - -
Lan2g0268 202 MobiDBLite consensus disorder prediction 151 184 - -
Lan2g0268 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 3 202 IPR040107 GO:0000398|GO:0005681
Lan2g0268 202 Coils Coil 154 181 - -
Lan2g0268 202 SMART ZnF_U1_5 83 117 IPR003604 GO:0003676|GO:0008270
Lan2g0268 202 MobiDBLite consensus disorder prediction 28 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0268 Lan-Chr2 2241014 2244244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0268 4 148 C2H2 Transcription Factor Family AT3G05760 79.310 3.95e-83 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan2g0268 zf-C2H2_jaz 1.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0268 K12848 - gmx:100527057 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1031 16 17519093 17522162 Lan2g0268 2 2241014 2244244 LSH