Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0243 ATGAAGAGCAAAATAATCGCTTCTGCGGTTTCCCTCATTCTTGTGGTAGGTGTTGTTATTGGTGTTGTTGCCATTGTTAGTAGAGACAATGGTAACAACACTACAAGTGATGGTCATCAAATGAATTCTCACAATAAGGCTGTAACAGCTTTATGTAATGATGCAGATGATAAAAAACTATGCCATGAAGTTCTCAAACCTGTTAGTAACTCTTCAAACCCAAAGGAATACGTTGAAACCGTGGTGAAAACCACCATGGATAGTGTCATTAAGGCCTTTAACATGAGTGATAGGTTAACAGTTGAGCATGGAAAAAGTAACCCTAGCCTGAAAATGGCTCTTGATGATTGCAAGGATTTGTTGCAATCTGCTATCCATGAACTTGAGGCTTCAGGTGTTTTTGTTCGTGATGGAAATGTTCAAGATATCCTCACACATTCAGCAGAACTCAAAAATTGGTTGGGTGCTGTAATTGCCTATCAACAATCTTGCCTTGATGGCTTTGATACAGATGGAGAGAAGAAGATCCAAACACAATTGCATGCAGATAGTTTGGACAGTGTTGGAAAGCTTACTGGATTGGCTCTTGATGTTGTATCTGGGATTTCAAAAGTGCTTTCTTCATTGAACATGAATTTGAATTTGAAACCTGCCTCAAGAAGGCTTCTTGAGGTTGATCATGAAGGGTACCCTACATGGTTATCAGCTTCTGATCGTAAGCTTTTAACTGCTAAGGTTGAAGGTGGTAATAATGGATTTATACCTCATGCAATAGTTTCCAAGGATGGAAGTGGAAAATTTAAGACTATTTTGGATGCTATTAACTCATACCCAAAGGATCACCAAGGTAGATATGTTATATATGTTAAGGGAGGTATCTATAATGAGTACATTACTGTTGATAAGAAGAAGCCAAATATTTTGTTATATGGTGATGGCCCTTCAAAGACCATTATCACAGGTCGCAAAAACTTCAATGAGGGTGTTAAGACAATGAGAACTGCCACATTCTCCACCGTTGCTGATGGTTTCATTGCCAAGGGAGTTGCATTCGAGAACACCGCAGGTGCGATCGGCCACCAAGCAGTAGCACTTCGCGTGCAAGGTGATCGTTCAGCTTTCTTCGATTGCGCAATTCGTGGTTACCAAGACAGTCTATATGCACATGCTCACCGTCAGTTCTATCGCAATTGCGAAATCTCTGGCACCATTGATTTCATTTTCGGCTATGCCGCAGCCCTAATCCAAAACTCCAAGATCATAGTGAGGAAGCCAAATCCAAACCAATCAAACATTGTAGTAGCAGATGGCACAGATCAAAAGAACATGCCTACAGGAATAGTCCTTCAAAATTGTGAGATCCTCCCAGAGAGTGGATTACAAGCTGATAGGTTAACAGTTAAGACTTATTTAGCTAGGCCATGGAAGGCATACTCTAGGGCAGTGTTCATTGAGAATGTTATTGGTGACCTAATCCAGCCACAAGGTTATATTCCATGGGCTCCTGAACCCAACACACAATTCTCTTACTTTGCTGAGTTTGGTAACACTGGACCTGGTGCAAATACTCTTGGAAGGGCCAAGTTTGCTAAGGGACAAATCAATAAGCAAGAAGCTGAAAGGTTCATAGCTGAAAATTGGATTCAAGCTAGTACATGGTTGCCTCCAACTGGTATTCCTTTTGATGGTTCCTTCACCAAGCAATGA 1707 0.4095 MKSKIIASAVSLILVVGVVIGVVAIVSRDNGNNTTSDGHQMNSHNKAVTALCNDADDKKLCHEVLKPVSNSSNPKEYVETVVKTTMDSVIKAFNMSDRLTVEHGKSNPSLKMALDDCKDLLQSAIHELEASGVFVRDGNVQDILTHSAELKNWLGAVIAYQQSCLDGFDTDGEKKIQTQLHADSLDSVGKLTGLALDVVSGISKVLSSLNMNLNLKPASRRLLEVDHEGYPTWLSASDRKLLTAKVEGGNNGFIPHAIVSKDGSGKFKTILDAINSYPKDHQGRYVIYVKGGIYNEYITVDKKKPNILLYGDGPSKTIITGRKNFNEGVKTMRTATFSTVADGFIAKGVAFENTAGAIGHQAVALRVQGDRSAFFDCAIRGYQDSLYAHAHRQFYRNCEISGTIDFIFGYAAALIQNSKIIVRKPNPNQSNIVVADGTDQKNMPTGIVLQNCEILPESGLQADRLTVKTYLARPWKAYSRAVFIENVIGDLIQPQGYIPWAPEPNTQFSYFAEFGNTGPGANTLGRAKFAKGQINKQEAERFIAENWIQASTWLPPTGIPFDGSFTKQ* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0243 568 Gene3D - 252 565 IPR012334 -
Lan2g0243 568 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Lan2g0243 568 SMART PMEI_2 43 198 IPR006501 GO:0004857
Lan2g0243 568 CDD PMEI-like_3 50 204 - -
Lan2g0243 568 SUPERFAMILY Pectin lyase-like 257 562 IPR011050 -
Lan2g0243 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 200 IPR035513 -
Lan2g0243 568 TIGRFAM PME_inhib: pectinesterase inhibitor domain 36 177 IPR006501 GO:0004857
Lan2g0243 568 Pfam Pectinesterase 257 550 IPR000070 GO:0030599|GO:0042545
Lan2g0243 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 203 IPR035513 -
Lan2g0243 568 PANTHER PECTINESTERASE 4 565 - -
Lan2g0243 568 PANTHER PECTINESTERASE 4 565 - -
Lan2g0243 568 Pfam Plant invertase/pectin methylesterase inhibitor 47 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0243 Lan-Chr2 1993557 1996264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0243 4 560 Carbohydrate Esterase AT3G62170 39.420 1.12e-135 405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0947 16 16548402 16551088 Lan2g0243 2 1993557 1996264 LSH
Lan8g0384 8 6001557 6004883 Lan2g0243 2 1993557 1996264 PCT
Lan20g0563 20 4275137 4278421 Lan2g0243 2 1993557 1996264 PCT