Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0240 ATGAGTTGTTTCGGCTGTTGTGAAGAGGAAGACTTGCATAAGACTGCTGCAAGTGGAGGACCATATGTGGCAAAAAACTCAGCAGGAAATGGTGGAAATTTTCAAGCTTCTGAAACTGCAAAGCAGGCTCAAGGTGTTAAAATTCAGCCCATTGAAGTTCCTGAGATATCGCTGGATGAACTAAAAGAAATTACTGAAAACTTCGGAGATATATCTCTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGTGTTCTTAAAAGTGGGCAGCATGCAGCAATCAAGAAGTTAGATGCCAGTAAACAGCCTGATGAGGAGTTTTTAGCCCAGGTTTCAATGGTTTCACGGCTTAAGCATGACAATTTTGTTCAATTGCTCGGTTACTGTGTTGATGGAACCTCCCGCATTCTTGCTTACGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTACATGGAAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTCTTACATGGGCACAGAGAGTTAAAATTGCTGTAGGAGCTGCAAAAGGGCTTGAGTACTTACATGAGAGGGCTAATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTATTAATCTTTGATGATGATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAAGCTCCTGACATGGCGGCACGTCTTCATTCCACCCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCGATGACTGGACAGTTGAATGCTAAGAGCGATGTATACAGCTTTGGTGTTGTCCTTCTGGAACTTTTGACCGGAAGGAAGCCTGTCGATCATACACTACCACGCGGGCAGCAAAGCCTGGTTACTTGGGCTACACCAAAACTCAGTGAGGATAAAGTCAAGCAATGTGTAGATGTTAGACTAGGTGGAGAATACCCGCCCAAAGCTGTTGCTAAGATGGCCGCAGTTGCTGCACTTTGCGTGCAATATGAAGCCGATTTCAGACCAAACATGAGCATTGTCGTAAAAGCCCTTCAACCTTTGATGAATGCAAGACCTGGACCTACTAATGAAACTACAAACTAA 1083 0.4349 MSCFGCCEEEDLHKTAASGGPYVAKNSAGNGGNFQASETAKQAQGVKIQPIEVPEISLDELKEITENFGDISLIGEGSYGRVYYGVLKSGQHAAIKKLDASKQPDEEFLAQVSMVSRLKHDNFVQLLGYCVDGTSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAAKGLEYLHERANPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLMNARPGPTNETTN* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0240 360 SUPERFAMILY Protein kinase-like (PK-like) 47 344 IPR011009 -
Lan2g0240 360 ProSiteProfiles Protein kinase domain profile. 68 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0240 360 Gene3D Transferase(Phosphotransferase) domain 1 143 357 - -
Lan2g0240 360 CDD STKc_IRAK 74 347 - -
Lan2g0240 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lan2g0240 360 SMART serkin_6 68 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0240 360 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Lan2g0240 360 PIRSF ILK 9 352 - -
Lan2g0240 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 358 - -
Lan2g0240 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 358 - -
Lan2g0240 360 Pfam Protein tyrosine and serine/threonine kinase 73 344 IPR001245 GO:0004672|GO:0006468
Lan2g0240 360 Gene3D Phosphorylase Kinase; domain 1 29 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0240 Lan-Chr2 1973861 1977359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0240 56 345 Receptor kinase-like Gene Family AT4G02010 50.680 1.54e-90 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lan2g0240 PK_Tyr_Ser-Thr 4.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0240 K13436 - gmx:100499642 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0942 4 11827424 11830530 Lan2g0240 2 1973861 1977359 LSH
Lan2g0240 2 1973861 1977359 Lan8g0385 8 6005836 6009666 PCT
Lan2g0240 2 1973861 1977359 Lan20g0560 20 4247889 4251862 PCT
Lan8g0385 8 6005836 6009666 Lan2g0240 2 1973861 1977359 PCT
Lan20g0560 20 4247889 4251862 Lan2g0240 2 1973861 1977359 PCT