Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0237 ATGGACGATTGTTGTGCCGTTTGCGCTGAGCCTCTGGAATGGGTTGCGTACGGATCCTGTTTGCATCGCGACGTTTGTTCCACCTGCGTCTCTCGCCTCCGTTTCATTTGCGACGATCGACGTTGTTGCATCTGCAAAACCGAATGCGACGTCGTTTTCATTACCAAGGCTCTAGGAGATTATACAAGGATGATTAATGACTTTTCAGTCCTGCCATCTAACATAAGAGAGGGCAAGGTTGGATCATATTGGTACCATGAGGACACAAATGCATATTTTGATGATATGGATCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCGTGCAGTGTATGTGACAAGATGGAGGAGCAACCACATGATGCTTCTAGGCGACGTGAAAGATTTAAGAATATAGGTCAGCTGAAAGGCCACTTATTCCACCGTCATAAGTTGCATATGTGCAGTTTATGTTTGGAGGGAAGGAAGATATTTATATGTGAGCAAAAACTATATAGTAGAGCACAGTTGAATCAACACATAAGCACAGGTGACTCTGTGGTGGATGGCAGTGAGAGTGAGAGAGGTGGTTTTATGGGGCATCCCATGTGTGAATTCTGCAGAACCCCATTTTATGGGGACAATGAATTATACACACATATGTCCACAGAACATTATACATGTCATATATGCCAAAGGCAGCATCCAGGACAGTATGAATACTATAAGAATTATGATGACCTAGAGATCCATTTCCGTCAACAGCACTTCTTATGTGAAGATGAGGCTTGCCTTGCCAAGAAGTTTGTTGTCTTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTACTGAACATGGAGGACGTATGTCACGGTCAAAGCGTAATGCTGCTCTTCAGATACCGACTAGCTTTCGATACAGACATGGTAATGAACAGAATCAACGTCGTGGAAGAGCTCGGACATTCCGTCGTGATGTGTCTGACAATCAACTTTCTATGGCCATTGAAGCCAGTTTGGAGACAGCTAATGCAGAGCAAATGTTTCATGATCCATCAACAAGTAGTGGTCAAGTTGCTGATGATGATGGGAATGATGATGTTGATTCTATCATTCAGCCGTTTGAATCATTGGCTACATCAGGTTCTGAACCATCTTCAAGATACCTCCAAGCATTGGGACACAGCTCCAGGGGTGCACCACTAGAAGATTCTTCCTTTCCTCCGCTTGCCACACCTTCCAGCAACGGCCAGCAAAGTTCCAAAAATGAGTTGGAGGGTTCATCTACTAACACTATGGCAGCGCGTTTGCGCCGGCGTGGCAATAAAAAAGTTTCTGTTATTAATTCTGGTAATGCTTGGCCTGCTGCTGGTCGGGGACCGATAGAAACATCAAGTATCCCTACACAATCTAAACTGCCAGCAAATGTTGTTCCTGGAGTGTCATCTAATTCTGGTCTGGTGAAGACGGTAATTAGAAATGGGGGTTTTCCATCAACTTATGCTAGTTCTATTCAAGCTGCACAGAGAACTGCACATGGACAATGGTCTGCTGGTTCATTGCAGGAAAAACGTGACAATGGTAGAATTGTTCACTCTACATCTGCTCCTAATCTCACTAAGAGCAACCCTATTGAAGGTTCAATTTCCGATTTCCCTCCAATTTCTGCTGCACAAGTGAGTAAGTTACCTGCTAGCAGCAGCCAATCCCTGTTGAATGAGGAGAATGTTCACTCTGCCAACAAGTCTTTGGTTGAAAAGATTCGTGGTGCTCTAGATTTTGATGAAGATAGATACACACTATTTAAAGACATATCTGCTCAATTTCGCCAAAGCACGATAGATACAGATACATATCTGGATTATGTCCAGCAGTTTGGCTTATCTCATCTTGTACTTGAGATGGCAAGACTGTGCCCTGATCCTCAGAAGCAGAAAGAACTTGTTGAATCCTACAACTTTAGTTTGCAAAGAAATGCTTTACGAGAAAACTACAGGGTTCATGGGATCACTCCCACCCATGGCAAGGACAGTAATACCTCCAAAAAAGGCAAAGGTAAGTCTGTAGATGTTAGAGGGAGCCACTCTACAGAGAGATTAGCAGGTAGCTTTCTAAGCACTGTACATCAACTACAATCGAGTTATAAAACTTCAGAAGAGAACTCGGAGGTACTATCAAAGGGTGATTATCGCACCAACAAAGGCAAATTAAAAATCGAGCAGCAGATCAATACAAATTCTGGTACTCAACCTATAAAGAAGCTAAGTGGGCAAAGTGAAACATCAGCTGGCAGTTTATCTAGTCAAAATAGAGAGGATGTGGGTGGTGGGAGCAAGCAACGCAAGAAAGCATCCAAGTTCCTTAAAGTGCGCCTTGGTGATGGTTCTGTTTCAGCACTTCTAGATCGTGAAAGTTCACACATCGAATCAGATTTTGGAATAACAAATGGTTTAGATGGTGACAAGAATAACTCTGGAGGGTTGCCTGCGCGAGGTGTTTGGCGAAAAGGTGGTGCTCAGAGACTGTTTCCCTGA 2517 0.4346 MDDCCAVCAEPLEWVAYGSCLHRDVCSTCVSRLRFICDDRRCCICKTECDVVFITKALGDYTRMINDFSVLPSNIREGKVGSYWYHEDTNAYFDDMDHYKMIKAMCRLSCSVCDKMEEQPHDASRRRERFKNIGQLKGHLFHRHKLHMCSLCLEGRKIFICEQKLYSRAQLNQHISTGDSVVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQQHFLCEDEACLAKKFVVFQSEAEMKRHNATEHGGRMSRSKRNAALQIPTSFRYRHGNEQNQRRGRARTFRRDVSDNQLSMAIEASLETANAEQMFHDPSTSSGQVADDDGNDDVDSIIQPFESLATSGSEPSSRYLQALGHSSRGAPLEDSSFPPLATPSSNGQQSSKNELEGSSTNTMAARLRRRGNKKVSVINSGNAWPAAGRGPIETSSIPTQSKLPANVVPGVSSNSGLVKTVIRNGGFPSTYASSIQAAQRTAHGQWSAGSLQEKRDNGRIVHSTSAPNLTKSNPIEGSISDFPPISAAQVSKLPASSSQSLLNEENVHSANKSLVEKIRGALDFDEDRYTLFKDISAQFRQSTIDTDTYLDYVQQFGLSHLVLEMARLCPDPQKQKELVESYNFSLQRNALRENYRVHGITPTHGKDSNTSKKGKGKSVDVRGSHSTERLAGSFLSTVHQLQSSYKTSEENSEVLSKGDYRTNKGKLKIEQQINTNSGTQPIKKLSGQSETSAGSLSSQNREDVGGGSKQRKKASKFLKVRLGDGSVSALLDRESSHIESDFGITNGLDGDKNNSGGLPARGVWRKGGAQRLFP* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0237 838 MobiDBLite consensus disorder prediction 661 688 - -
Lan2g0237 838 CDD RING-HC_ZNF598 5 46 IPR041888 -
Lan2g0237 838 SMART c2h2final6 220 250 IPR013087 -
Lan2g0237 838 SMART c2h2final6 251 280 IPR013087 -
Lan2g0237 838 SMART c2h2final6 196 219 IPR013087 -
Lan2g0237 838 SMART c2h2final6 108 144 IPR013087 -
Lan2g0237 838 PANTHER EBR1 1 836 - -
Lan2g0237 838 MobiDBLite consensus disorder prediction 402 426 - -
Lan2g0237 838 MobiDBLite consensus disorder prediction 807 838 - -
Lan2g0237 838 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Lan2g0237 838 MobiDBLite consensus disorder prediction 672 688 - -
Lan2g0237 838 MobiDBLite consensus disorder prediction 730 777 - -
Lan2g0237 838 PANTHER ZINC FINGER PROTEIN 598 1 836 IPR044288 GO:0061630|GO:0072344
Lan2g0237 838 MobiDBLite consensus disorder prediction 343 364 - -
Lan2g0237 838 MobiDBLite consensus disorder prediction 731 768 - -
Lan2g0237 838 MobiDBLite consensus disorder prediction 389 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0237 Lan-Chr2 1939542 1945410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0237 1 833 C2H2 Transcription Factor Family AT3G62240 53.279 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0237 K22381 - gmx:100799878 1321.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0943 4 11834225 11839929 Lan2g0237 2 1939542 1945410 LSH
Lan16g0944 16 16501910 16507530 Lan2g0237 2 1939542 1945410 LSH