Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan2g0227 | ATGTCAAAGAGAAAATTCGGTTTCGAAGGTTTCGGCATTCACCGTCAATCCACCTTCGATTTCGAACAATCTCAACCTCCTCAACGACTCTACGTCCCTCCCTCCTCCCGTCACGGCGGCGCTCACGACAACCACGAAGACACCGACCTCGACAACATCGATTACGACGACAATAACGACGGAAACAACAACAACAACGATGTTGGTGTTTCTGGTGGTGGTGATGATGGTGAAATTGATCCCTTGGATGCATTCATGGAAGGGATTCACGAGGAGATGAAGGCGGCGCCGCGGCCGAAGGAGAAAGAAAAGGTTGAAGATAGGTTTAAGGATGATGATGAAGAGGATCCAATGGAGAGTTTTTTGAGAGCTAAGAAGGATTTAGGGTTGACACTTGCTTCGGATGCGCTTCACGCGGGGTATGATTCGGATGAAGAGGTTTATGCTGCTGCTAAAGCTGTGGATGCTGGTTTAGTGGAGTATGATTCTGATGATAATCCTATTGTTATTGATAAGAAGAAAATTGAACCTATACCTGCACTTGATCATAGTTCTATTGATTATGAACCTTTTAATAAGGATTTTTATGAGGAGACACCTTCAATTTCAGGCATGAGCGAGCAAGATGTAAATGAATATAGGAAAAGTTTGGCCATTCGTGTATCGGGTTTTGATGTTCCTAAGTCAGTCAAGACATTTGAGGACTGTGGTTTTTCTACACAAATTATGGGTGCTATTAAAAGGCAAGGCTATGAGAAGCCCACATCTATACAATGCCAAGCTTTACCAGTTGTGCTTTCTGGTAGAGATATCATTGGTATAGCGAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCGGAACTTCAGAAGGAGGAGGGTCCTATAGGAGTTATTTGTGCACCTACTAGAGAATTGGCACACCAGATATATCTGGAGGCCAAGAAATTTGCAAAGTCGTATGGTATACGTGTATCTGCTGTCTATGGTGGAATGTCAAAACTTGAGCAGTACAGAGAACTCAAGGCGGGCTGCGAGGTTGTTGTTGCTACCCCTGGCAGGTTGATAGACATGCTAAAAATGAAGGCATTGACAATGACAAGAGCAACTTACCTGGTGTTTGATGAGGCTGATAGGATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCGATTGTTGGTCAGATTAGGCCAGATCGCCAAACTTTACTTTTCTCTGCAACAATGCCTCATAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACTGATCCTATTAGAGTAACAGTTGGGGAGGTGGGAATGGCAAATGAAGATATTACTCAAGTTGTTCATGTAATTCCTTCTGATTCTGAAAAATTGCCATGGCTTCTGGAGAAGCTGCCTGAAATGATTGATCAAGGTGATACCCTAGTATTCGCTTCCAAGAAAGCTGCTGTAGATGAAGTTGAATCACAATTGGCTCTGAGAGGTTTTAAAGTTGCTTCCCTGCATGGTGATAAAGATCAAGCTTCTCGGATGGATATTTTGCAGAAGTTTAAATCTGGCACATACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAGTCAATTAAGTCAGTGGTGAACTTTGATATTGCAAAAGATATGGACATGCATGTGCATCGCATTGGAAGAACAGGCCGTGCTGGTGACAAGGATGGGGTTGCGTACACACTTATAACTCAGAAAGAAGCACGATTTGCTGGTGAATTGGTTAATAGCTTAATCACTGCCGGTCAGAATGTATCCGTGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCAAGAAAAGGAGGAGGGAAAAAAGGCAAAGGGAGAGGTGGTGGAGGTGGCAGCGGACGAGGTGTGCGTGGAGTTGATTTTGGCTTGGGTATTGGATATAATCCAGAGTCCAACAGTGCTCCATCTAACCCAGTTCCAAGTCGATCTACCGCTGTAAATTCTATACGGTCAGGAGTTATGTCACAATTTAGGAATAACTTTGTTGCTGCCTCATCAACCACTCAAAGTCAAGGATTCACTAATAATGCTAGCATTCCCGCAAAGAGACCAGCACTCACTGGCTTTGTATCCGGTGGATCGATTGGCGGGGATATAAATACTCATCAGAATACTTCTTCATCCAGTCCTGCTACACCCACAGTAAATACCACTAGTAGAAACTCTGGAGTAAATTCTGGTCAGAAGAGCACAAATAGTTCCAAACCTAGAGAAAGGCGAAGAGCATCAGGTTGGGATAGATAG | 2328 | 0.4364 | MSKRKFGFEGFGIHRQSTFDFEQSQPPQRLYVPPSSRHGGAHDNHEDTDLDNIDYDDNNDGNNNNNDVGVSGGGDDGEIDPLDAFMEGIHEEMKAAPRPKEKEKVEDRFKDDDEEDPMESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLVEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEETPSISGMSEQDVNEYRKSLAIRVSGFDVPKSVKTFEDCGFSTQIMGAIKRQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKSYGIRVSAVYGGMSKLEQYRELKAGCEVVVATPGRLIDMLKMKALTMTRATYLVFDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPHKVEKLAREILTDPIRVTVGEVGMANEDITQVVHVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKAAVDEVESQLALRGFKVASLHGDKDQASRMDILQKFKSGTYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLITAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGSGRGVRGVDFGLGIGYNPESNSAPSNPVPSRSTAVNSIRSGVMSQFRNNFVAASSTTQSQGFTNNASIPAKRPALTGFVSGGSIGGDINTHQNTSSSSPATPTVNTTSRNSGVNSGQKSTNSSKPRERRRASGWDR* | 776 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan2g0227 | 775 | MobiDBLite | consensus disorder prediction | 718 | 775 | - | - | |
Lan2g0227 | 775 | MobiDBLite | consensus disorder prediction | 94 | 116 | - | - | |
Lan2g0227 | 775 | MobiDBLite | consensus disorder prediction | 761 | 775 | - | - | |
Lan2g0227 | 775 | MobiDBLite | consensus disorder prediction | 17 | 31 | - | - | |
Lan2g0227 | 775 | Pfam | Helicase conserved C-terminal domain | 466 | 571 | IPR001650 | - | |
Lan2g0227 | 775 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 214 | 440 | IPR027417 | - | |
Lan2g0227 | 775 | CDD | SF2_C_DEAD | 449 | 581 | - | - | |
Lan2g0227 | 775 | SMART | helicmild6 | 490 | 571 | IPR001650 | - | |
Lan2g0227 | 775 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 378 | 606 | IPR027417 | - | |
Lan2g0227 | 775 | SMART | ultradead3 | 250 | 452 | IPR014001 | - | |
Lan2g0227 | 775 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 231 | 259 | IPR014014 | GO:0003724 | |
Lan2g0227 | 775 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
Lan2g0227 | 775 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 383 | 391 | IPR000629 | - | |
Lan2g0227 | 775 | MobiDBLite | consensus disorder prediction | 616 | 673 | - | - | |
Lan2g0227 | 775 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 47 | 660 | - | - | |
Lan2g0227 | 775 | Gene3D | - | 439 | 615 | IPR027417 | - | |
Lan2g0227 | 775 | MobiDBLite | consensus disorder prediction | 657 | 673 | - | - | |
Lan2g0227 | 775 | Gene3D | - | 194 | 438 | IPR027417 | - | |
Lan2g0227 | 775 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 462 | 611 | IPR001650 | - | |
Lan2g0227 | 775 | MobiDBLite | consensus disorder prediction | 722 | 760 | - | - | |
Lan2g0227 | 775 | CDD | DEADc_DDX42 | 242 | 438 | - | - | |
Lan2g0227 | 775 | Pfam | DEAD/DEAH box helicase | 255 | 426 | IPR011545 | GO:0003676|GO:0005524 | |
Lan2g0227 | 775 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 262 | 437 | IPR014001 | - | |
Lan2g0227 | 775 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 | 47 | 660 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan2g0227 | Lan-Chr2 | 1867480 | 1872297 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan2g0227 | 230 | 581 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 33.239 | 2.58e-62 | 213 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan2g0227 | K12835 | - | gmx:100814854 | 1264.98 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan16g0933 | 16 | 16361635 | 16366365 | Lan2g0227 | 2 | 1867480 | 1872297 | LSH |