Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0227 ATGTCAAAGAGAAAATTCGGTTTCGAAGGTTTCGGCATTCACCGTCAATCCACCTTCGATTTCGAACAATCTCAACCTCCTCAACGACTCTACGTCCCTCCCTCCTCCCGTCACGGCGGCGCTCACGACAACCACGAAGACACCGACCTCGACAACATCGATTACGACGACAATAACGACGGAAACAACAACAACAACGATGTTGGTGTTTCTGGTGGTGGTGATGATGGTGAAATTGATCCCTTGGATGCATTCATGGAAGGGATTCACGAGGAGATGAAGGCGGCGCCGCGGCCGAAGGAGAAAGAAAAGGTTGAAGATAGGTTTAAGGATGATGATGAAGAGGATCCAATGGAGAGTTTTTTGAGAGCTAAGAAGGATTTAGGGTTGACACTTGCTTCGGATGCGCTTCACGCGGGGTATGATTCGGATGAAGAGGTTTATGCTGCTGCTAAAGCTGTGGATGCTGGTTTAGTGGAGTATGATTCTGATGATAATCCTATTGTTATTGATAAGAAGAAAATTGAACCTATACCTGCACTTGATCATAGTTCTATTGATTATGAACCTTTTAATAAGGATTTTTATGAGGAGACACCTTCAATTTCAGGCATGAGCGAGCAAGATGTAAATGAATATAGGAAAAGTTTGGCCATTCGTGTATCGGGTTTTGATGTTCCTAAGTCAGTCAAGACATTTGAGGACTGTGGTTTTTCTACACAAATTATGGGTGCTATTAAAAGGCAAGGCTATGAGAAGCCCACATCTATACAATGCCAAGCTTTACCAGTTGTGCTTTCTGGTAGAGATATCATTGGTATAGCGAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCGGAACTTCAGAAGGAGGAGGGTCCTATAGGAGTTATTTGTGCACCTACTAGAGAATTGGCACACCAGATATATCTGGAGGCCAAGAAATTTGCAAAGTCGTATGGTATACGTGTATCTGCTGTCTATGGTGGAATGTCAAAACTTGAGCAGTACAGAGAACTCAAGGCGGGCTGCGAGGTTGTTGTTGCTACCCCTGGCAGGTTGATAGACATGCTAAAAATGAAGGCATTGACAATGACAAGAGCAACTTACCTGGTGTTTGATGAGGCTGATAGGATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCGATTGTTGGTCAGATTAGGCCAGATCGCCAAACTTTACTTTTCTCTGCAACAATGCCTCATAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACTGATCCTATTAGAGTAACAGTTGGGGAGGTGGGAATGGCAAATGAAGATATTACTCAAGTTGTTCATGTAATTCCTTCTGATTCTGAAAAATTGCCATGGCTTCTGGAGAAGCTGCCTGAAATGATTGATCAAGGTGATACCCTAGTATTCGCTTCCAAGAAAGCTGCTGTAGATGAAGTTGAATCACAATTGGCTCTGAGAGGTTTTAAAGTTGCTTCCCTGCATGGTGATAAAGATCAAGCTTCTCGGATGGATATTTTGCAGAAGTTTAAATCTGGCACATACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAGTCAATTAAGTCAGTGGTGAACTTTGATATTGCAAAAGATATGGACATGCATGTGCATCGCATTGGAAGAACAGGCCGTGCTGGTGACAAGGATGGGGTTGCGTACACACTTATAACTCAGAAAGAAGCACGATTTGCTGGTGAATTGGTTAATAGCTTAATCACTGCCGGTCAGAATGTATCCGTGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCAAGAAAAGGAGGAGGGAAAAAAGGCAAAGGGAGAGGTGGTGGAGGTGGCAGCGGACGAGGTGTGCGTGGAGTTGATTTTGGCTTGGGTATTGGATATAATCCAGAGTCCAACAGTGCTCCATCTAACCCAGTTCCAAGTCGATCTACCGCTGTAAATTCTATACGGTCAGGAGTTATGTCACAATTTAGGAATAACTTTGTTGCTGCCTCATCAACCACTCAAAGTCAAGGATTCACTAATAATGCTAGCATTCCCGCAAAGAGACCAGCACTCACTGGCTTTGTATCCGGTGGATCGATTGGCGGGGATATAAATACTCATCAGAATACTTCTTCATCCAGTCCTGCTACACCCACAGTAAATACCACTAGTAGAAACTCTGGAGTAAATTCTGGTCAGAAGAGCACAAATAGTTCCAAACCTAGAGAAAGGCGAAGAGCATCAGGTTGGGATAGATAG 2328 0.4364 MSKRKFGFEGFGIHRQSTFDFEQSQPPQRLYVPPSSRHGGAHDNHEDTDLDNIDYDDNNDGNNNNNDVGVSGGGDDGEIDPLDAFMEGIHEEMKAAPRPKEKEKVEDRFKDDDEEDPMESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLVEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEETPSISGMSEQDVNEYRKSLAIRVSGFDVPKSVKTFEDCGFSTQIMGAIKRQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKSYGIRVSAVYGGMSKLEQYRELKAGCEVVVATPGRLIDMLKMKALTMTRATYLVFDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPHKVEKLAREILTDPIRVTVGEVGMANEDITQVVHVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKAAVDEVESQLALRGFKVASLHGDKDQASRMDILQKFKSGTYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLITAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGSGRGVRGVDFGLGIGYNPESNSAPSNPVPSRSTAVNSIRSGVMSQFRNNFVAASSTTQSQGFTNNASIPAKRPALTGFVSGGSIGGDINTHQNTSSSSPATPTVNTTSRNSGVNSGQKSTNSSKPRERRRASGWDR* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0227 775 MobiDBLite consensus disorder prediction 718 775 - -
Lan2g0227 775 MobiDBLite consensus disorder prediction 94 116 - -
Lan2g0227 775 MobiDBLite consensus disorder prediction 761 775 - -
Lan2g0227 775 MobiDBLite consensus disorder prediction 17 31 - -
Lan2g0227 775 Pfam Helicase conserved C-terminal domain 466 571 IPR001650 -
Lan2g0227 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 440 IPR027417 -
Lan2g0227 775 CDD SF2_C_DEAD 449 581 - -
Lan2g0227 775 SMART helicmild6 490 571 IPR001650 -
Lan2g0227 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 606 IPR027417 -
Lan2g0227 775 SMART ultradead3 250 452 IPR014001 -
Lan2g0227 775 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 231 259 IPR014014 GO:0003724
Lan2g0227 775 MobiDBLite consensus disorder prediction 1 78 - -
Lan2g0227 775 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 383 391 IPR000629 -
Lan2g0227 775 MobiDBLite consensus disorder prediction 616 673 - -
Lan2g0227 775 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 47 660 - -
Lan2g0227 775 Gene3D - 439 615 IPR027417 -
Lan2g0227 775 MobiDBLite consensus disorder prediction 657 673 - -
Lan2g0227 775 Gene3D - 194 438 IPR027417 -
Lan2g0227 775 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 462 611 IPR001650 -
Lan2g0227 775 MobiDBLite consensus disorder prediction 722 760 - -
Lan2g0227 775 CDD DEADc_DDX42 242 438 - -
Lan2g0227 775 Pfam DEAD/DEAH box helicase 255 426 IPR011545 GO:0003676|GO:0005524
Lan2g0227 775 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 262 437 IPR014001 -
Lan2g0227 775 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 47 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0227 Lan-Chr2 1867480 1872297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0227 230 581 Eukaryotic Initiation Factors Gene Family AT3G19760 33.239 2.58e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0227 K12835 - gmx:100814854 1264.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0933 16 16361635 16366365 Lan2g0227 2 1867480 1872297 LSH