Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0216 ATGGTGTCTCTGAAACTTCAGAAGCGCCTTGCTGCTAGTGTGCTCAAGTGTGGAAGAGGCAAGGTTTGGCTTGATCCCAATGAGGGCAATGAAATCTCCATGGCCAACTCTCGTCAAAACATAAGGAAGTTGGTGAAGGATGGCTTTATTATCAGGAAACCCACTAAGATTCACTCCCGCTCCCGTGCTCGGAGAATTAAGGAAGCAAAGAGGAAGGGACGACATTCTGGATACGGTAAGCGTAAGGGTACAAGGGAAGCAAGACTTCCAACCAAAATCCTTTGGATGAGAAGATTGCGTGTGCTGAGGCGCTTGCTTCGCAAGTACCGAGAATCTAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGAGTTCTAATGGAGAGCATTCACAAGTCCAAGGCTGAAAAGGCAAGAGAGAAGACCTTGTCCGATCAGTTTGAGGCCAAACGTGCCAAGAACAAGGCCAGCAGAGAAAGGAAACATGCTCGCAGGGAGGAGCGATTGGCACAAGGTCCCGGTGAAAAGCCAGTCGCTGCAGCTACTGCTGCACCAGTTACAGCATCACAGCCTGTCCAAGCTACAAAGAAATCCAAGAAGTGA 639 0.4789 MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRIKEAKRKGRHSGYGKRKGTREARLPTKILWMRRLRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAQGPGEKPVAAATAAPVTASQPVQATKKSKK* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0216 212 MobiDBLite consensus disorder prediction 198 212 - -
Lan2g0216 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lan2g0216 212 MobiDBLite consensus disorder prediction 144 212 - -
Lan2g0216 212 Gene3D - 57 188 - -
Lan2g0216 212 MobiDBLite consensus disorder prediction 60 79 - -
Lan2g0216 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Lan2g0216 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lan2g0216 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lan2g0216 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Lan2g0216 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Lan2g0216 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 212 IPR039547 GO:0003723|GO:0003735|GO:0022625
Lan2g0216 212 MobiDBLite consensus disorder prediction 60 85 - -
Lan2g0216 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Lan2g0216 212 MobiDBLite consensus disorder prediction 144 184 - -
Lan2g0216 212 PANTHER RIBOSOMAL PROTEIN L19 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0216 Lan-Chr2 1796977 1799226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0216 1 212 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.962 1.44e-126 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0216 K02885 - gmx:100499920 384.8