Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0205 ATGGAGTTATACAATCGAAACCCATCACGGACCGGTTCCAACCAAATCGAATGGCACTCGCCGGGAACAAAAACCGGTCTAGAAGAATCGATGTGGCAATTGAAGCTGAGTAGCGTTGATTCATATCCGGAACGAGTTGGAGCTCCGAATTGTGTGTATTATATGAGAACTGGGTTCTGTGGATATGGTGGGAGGTGTCGTTATAATCATCCTCGTGATCGCGCTGCGGTTGCTGCAGCTGTAAGAGCTACAGGGGAGTACCCAGAACGAGTAGGGGAACCTCCATGTCAGTATTATTTAAAAACTGGAACATGTAAATTTGGTGCATCTTGTAAATTCCACCATCCCAAACATGGAGGTGGATCTTTAAGCCAAGCTCCACTAAATATTTATGGATGCCCGTTAAGGCCGGGTGAGAAGGAATGCTCCTACTATTTGAAAACAGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCACCCTCAACCTGCTGACACATCCTTGCCAGCTTCTGCACCTCAATTTTATCAACAGGCGCAGTCTCCGACGGTTCCTCTGCCTGACCAGTATGGAGGAGCATCCACAAGCTTGAGGGTAGCTAGGCCTCCTATATTACCTGGTTCATATATACAAGGAGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCACCTGTAAGTCCTGTGTTATCTCCTGGTGCTCAACCTGCTGTTGGGGCCACTTCTCTGTATGGAGTGACCCAGTTGAATTCATCCACATCAGCTTTTGCTAGACCATATACTCCACTCCCCTCTTCTTCTGGTCCATCAGGAAGCAACCAGAAGGAGCAGGTATTTCCTGAAAGGCCTGGCGAACCTGAATGCCAATATTTTCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATTTAATCACCCTAGGGATCGGGTTGTAGCACAGCCACTTCTAAACCCCATTGGTCTCCCTCTTCGTCCGGGGGTACAACCTTGTGCATTTTATTTGCAAAACAATAATTGCAAGTTTGGCTCTGCATGCAAATTTGACCATCCTTGGGGGCCTGTGAGATACAGTACATCAACGTCTTCCCTGATTGATATGCCAGTTACAACATACCCAGTTGGTTCTTTGCTGTCTACCCTGGCTCCTTCATTAACATCTTCGGCACTTCGACCTGAATCGCTTTCAGGGTCCAAACTGGAATCCTTTACAACCAGAATATAA 1260 0.4667 MELYNRNPSRTGSNQIEWHSPGTKTGLEESMWQLKLSSVDSYPERVGAPNCVYYMRTGFCGYGGRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGCPLRPGEKECSYYLKTGQCKFGITCKFHHPQPADTSLPASAPQFYQQAQSPTVPLPDQYGGASTSLRVARPPILPGSYIQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLNSSTSAFARPYTPLPSSSGPSGSNQKEQVFPERPGEPECQYFLRTGDCKFGLACRFNHPRDRVVAQPLLNPIGLPLRPGVQPCAFYLQNNNCKFGSACKFDHPWGPVRYSTSTSSLIDMPVTTYPVGSLLSTLAPSLTSSALRPESLSGSKLESFTTRI* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0205 419 SUPERFAMILY CCCH zinc finger 49 74 IPR036855 GO:0046872
Lan2g0205 419 MobiDBLite consensus disorder prediction 268 288 - -
Lan2g0205 419 MobiDBLite consensus disorder prediction 268 293 - -
Lan2g0205 419 Gene3D - 119 171 - -
Lan2g0205 419 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Lan2g0205 419 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Lan2g0205 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 295 320 IPR000571 GO:0046872
Lan2g0205 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Lan2g0205 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 339 363 IPR000571 GO:0046872
Lan2g0205 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 72 IPR000571 GO:0046872
Lan2g0205 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Lan2g0205 419 Gene3D - 282 365 - -
Lan2g0205 419 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Lan2g0205 419 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Lan2g0205 419 SMART c3hfinal6 45 72 IPR000571 GO:0046872
Lan2g0205 419 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Lan2g0205 419 SMART c3hfinal6 293 320 IPR000571 GO:0046872
Lan2g0205 419 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Lan2g0205 419 Gene3D - 44 118 - -
Lan2g0205 419 ProSiteProfiles Zinc finger C3H1-type profile. 293 321 IPR000571 GO:0046872
Lan2g0205 419 ProSiteProfiles Zinc finger C3H1-type profile. 45 73 IPR000571 GO:0046872
Lan2g0205 419 SUPERFAMILY CCCH zinc finger 297 322 IPR036855 GO:0046872
Lan2g0205 419 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872
Lan2g0205 419 SUPERFAMILY CCCH zinc finger 139 164 IPR036855 GO:0046872
Lan2g0205 419 MobiDBLite consensus disorder prediction 1 22 - -
Lan2g0205 419 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 396 - -
Lan2g0205 419 SUPERFAMILY CCCH zinc finger 339 367 IPR036855 GO:0046872
Lan2g0205 419 PANTHER PROTEIN PHOSPHATASE RELATED 1 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0205 Lan-Chr2 1714847 1723005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0205 17 417 C2H2 Transcription Factor Family AT5G18550 51.537 1.82e-132 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan2g0205 zf-CCCH 1.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0205 - - lang:109331475 850.506