Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0199 ATGGCAGAATTGAAGGAAGAGAGTAAATCTAAGGAAGAAAGTGTGAAACTTTTTGTGGGTCAAGTACCAAAAAACATGACCGAAGATGAACTACTTCAAATGTTCAAAGAGTTTTCGTTGGTTCAACAAGTTAACATTATCAAGGACAAAGTTACACGCGCCTCTAGAGGTTGTTGCTTCTTGATTTGTCCATCCAGGGAAGAGGCTGATAAGGCTGTTAATGCCTTTCATAATAAGAAAACACTCCCAGGGGCTTCTAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGACTAGAACATAAACTCTTCATTGGCATGCTCCCAAAGATTGTTTCTGAAGTTGAAGTCTCTGCACTTTTCTCCAATTATGGAACTATAAAGGATTTACAGATTCTAAGAGGTTCTCAGCAAACAAGTAAAGTAGGTTGTGCATTTTTGAAGTATGAAACGAAAGAACAGGCAATTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCTTTGGTTGTAAAATGGGCTGATACTGAAAAGGAAAGACAAACTCGAAAAGCTCAGAAAGCGCAGTCCCAAGCTTCGAATGTGCCACATGCTGATTCTCAGCATCCATCATTATTTGGAGCCGTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTACCAGGCTCCTGGGGGTTATGGGATGATGCCATACCGCTTGCCGCCGATGCAGAATCAACCTGGTTTTCATAACATGATGCCTCACGTGAATCAAGGAAATGCATTACGGCCTGGTCTTGGCCCCAATATGAACCATAGAAATTATCCTTTGCTTCCTTCAAGTTACGTTGGTTCTTACCCTGCCGTGCCCGGTGTACAACATCCAATGGCGTATCATGGAAGAATGATTAGTCCAAGACCTATGAGTTGTTCTCCCGGCTCCGTTTCACCTGTAGGTGGAAATAGCATCTCTTCTACATCTTCAGGCGCCGGCAAACATGCCGGTGGTAGTCAAGTTGAAGGACCACCTGGTGCCAATTTATTTATTTATCACATTCCACAAGAATTCGGAGATGAAGAACTTGCAACTGCTTTTCAACCATTTGGTAGAGTTGTGAGTGCTAAAGTTTTTGTCGATAAAACAACATGTGTTAGCAAATGTTTCGGGTTTGTTAGTTATGATTCACCAGAAGCTGCTCAATCTGCCATTAGCATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGAAAACAAAGAGAAAAAGTCATATTGA 1302 0.4171 MAELKEESKSKEESVKLFVGQVPKNMTEDELLQMFKEFSLVQQVNIIKDKVTRASRGCCFLICPSREEADKAVNAFHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKIVSEVEVSALFSNYGTIKDLQILRGSQQTSKVGCAFLKYETKEQAIAALEAINGKHKMEGSSVPLVVKWADTEKERQTRKAQKAQSQASNVPHADSQHPSLFGAVPMGYVPPYNGYGYQAPGGYGMMPYRLPPMQNQPGFHNMMPHVNQGNALRPGLGPNMNHRNYPLLPSSYVGSYPAVPGVQHPMAYHGRMISPRPMSCSPGSVSPVGGNSISSTSSGAGKHAGGSQVEGPPGANLFIYHIPQEFGDEELATAFQPFGRVVSAKVFVDKTTCVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQLKRENKEKKSY* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0199 433 MobiDBLite consensus disorder prediction 194 208 - -
Lan2g0199 433 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 9 420 - -
Lan2g0199 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 184 IPR000504 GO:0003723
Lan2g0199 433 CDD RRM3_CELF1-6 350 422 - -
Lan2g0199 433 Gene3D - 100 195 IPR012677 -
Lan2g0199 433 Gene3D - 2 99 IPR012677 -
Lan2g0199 433 CDD RRM1_2_CELF1-6_like 104 180 - -
Lan2g0199 433 CDD RRM1_2_CELF1-6_like 16 92 - -
Lan2g0199 433 Gene3D - 325 432 IPR012677 -
Lan2g0199 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 420 IPR000504 GO:0003723
Lan2g0199 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Lan2g0199 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Lan2g0199 433 SUPERFAMILY RNA-binding domain, RBD 12 430 IPR035979 GO:0003676
Lan2g0199 433 MobiDBLite consensus disorder prediction 312 336 - -
Lan2g0199 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 426 IPR000504 GO:0003723
Lan2g0199 433 MobiDBLite consensus disorder prediction 312 341 - -
Lan2g0199 433 SUPERFAMILY RNA-binding domain, RBD 102 198 IPR035979 GO:0003676
Lan2g0199 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Lan2g0199 433 MobiDBLite consensus disorder prediction 185 209 - -
Lan2g0199 433 Coils Coil 423 433 - -
Lan2g0199 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Lan2g0199 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Lan2g0199 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Lan2g0199 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Lan2g0199 433 PANTHER RNA BINDING PROTEIN 9 420 - -
Lan2g0199 433 SMART rrm1_1 349 422 IPR000504 GO:0003723
Lan2g0199 433 SMART rrm1_1 16 92 IPR000504 GO:0003723
Lan2g0199 433 SMART rrm1_1 104 180 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0199 Lan-Chr2 1663726 1669088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0199 348 432 Eukaryotic Initiation Factors Gene Family AT4G34110 27.059 6.75e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0199 K13207 - gmx:100813239 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1046 4 15114129 15119656 Lan2g0199 2 1663726 1669088 LSH