Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0192 ATGGATACACGCAAGAGAGGAAGGCACGATTTCAACAACTTCAATGGCGGATTTAAGAAAACGAAGCAAGAAATGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCCGGCTGCCCATTTGGTGAGAGCTGCCACTTCCTGCACTACGTTCCTGGTGGATATAATGCTGTTGCCCATATGATACATATAAAACCTGCTGCACCTCCGCCATCTAGAGATGTTGTGGCCCCGTCACTTGGCCCTAATGGGTCTGGACAGCCTACAGTTAAAAGTCGCATATGCAGCAAGTTCAATACTGCTGAAGGCTGCAAATTTGGTGACAAATGTCATTATGCCCATGGTGAATGGGAACTTGGCAAGCCTACTGCCCCATCATTTGATGATCATCGTCCAGTCGGACCCCCTTTGGCAAGACGTATGCCTGGTCGAATGGAGACTCCTCCTGGTCTAGGTGCTAGCTTCGGTGCCAATGCCACAGCCAAGATCAGTGTAGAAGCTTCCTTGGCTGGAGCAATAATTGGGAAGGGTGGCGTGAACTCGAAGCAGATTTGTCGCCAAACAGGAGTCAAACTTTCAATTCGAGATCACGAATCTGATCCTAATATTAGAAACATTGAACTAGAAGGAAGTTTTGAACAGATCAAGGAAGCAAGTAACATGGTAAAGGAATTACTTTTCACCCTGCAGATGCATGCTCCACCGAAACCGACCCATGGTGTTCCTAGTCGCCATGCCCCTCCTGGAAGTAACTTCAAGACCAAGCTGTGTGACAATTTTACAAAAGGATCTTGCACTTTTGGCGAAAGATGTCACTTTGCGCATGGAGCTGCAGAATTGAGTAACCGAGGAGTATGA 885 0.4701 MDTRKRGRHDFNNFNGGFKKTKQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAHMIHIKPAAPPPSRDVVAPSLGPNGSGQPTVKSRICSKFNTAEGCKFGDKCHYAHGEWELGKPTAPSFDDHRPVGPPLARRMPGRMETPPGLGASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGVKLSIRDHESDPNIRNIELEGSFEQIKEASNMVKELLFTLQMHAPPKPTHGVPSRHAPPGSNFKTKLCDNFTKGSCTFGERCHFAHGAAELSNRGV* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0192 294 CDD KH-I 169 232 - -
Lan2g0192 294 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Lan2g0192 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Lan2g0192 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 285 IPR000571 GO:0046872
Lan2g0192 294 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 293 - -
Lan2g0192 294 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 293 - -
Lan2g0192 294 Gene3D K Homology domain, type 1 167 236 IPR036612 GO:0003723
Lan2g0192 294 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 243 IPR036612 GO:0003723
Lan2g0192 294 SMART kh_6 166 236 IPR004087 GO:0003676
Lan2g0192 294 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Lan2g0192 294 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Lan2g0192 294 SUPERFAMILY CCCH zinc finger 260 289 IPR036855 GO:0046872
Lan2g0192 294 Gene3D - 254 291 - -
Lan2g0192 294 Gene3D - 93 130 - -
Lan2g0192 294 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Lan2g0192 294 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Lan2g0192 294 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Lan2g0192 294 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Lan2g0192 294 SMART c3hfinal6 100 125 IPR000571 GO:0046872
Lan2g0192 294 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Lan2g0192 294 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Lan2g0192 294 Pfam KH domain 170 233 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0192 Lan-Chr2 1620357 1623897 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan2g0192 KH_1 8.9e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0192 - - gmx:100803981 486.878