Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0190 ATGGGGGATGAGATTTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCGGAGCCACTAGTTGGGTCCACAGTCGATGAAGCTATGAACTTGGATGATTGGATTGAGGACCCTTTTCATAGATTCAATGAAGCTGTGAGGCTTAGGTCACGACAACGATGGAGATGGCGGCATCATCTTGCTATCCTTCCTCCTCCTCCTCCTTCTGCTGCTGCATTTCATGTTCCGGAAGTGCCACCACATTTGCATTTTCATATACCCCCGGAAGCTCGAAATATCTCGATGGAATTCAACCAGTATTTGGTTAATTCTGGTCATGGAAGTCCCTTACAGGCTGGTGAAGGCAGTGTGGCTGTTGAGGAGAGGATTGAAGTGGAGATGCCCAAAGTATGTGAACACAACAATGGTGTTATGGAGGATGAGACAGCAGAAAAGAAGGATGATGTTGACACGGGTAGTGGCAATGATAGGGATTTTTTCGATTGTAATATATGTTTGGACCTGGCCAAGGATCCTGTTGTGACTTGTTGTGGCCATTTGTTTTGTTGGCCATGCCTGTATCGATGGGTGCATTTACATTCCGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAAGTGATTCTTAAGAATGTTACACCGATATATGGTCGTGGAAACAATGTTCGTGTTCCTGAGGAGGATGTCACTCTGAAAATCCCTCTCAGGCCCCAGGCTAGGCGTGTTGAGAGTTTGAGACAAACCCTTCAGAGAAATCCATTTGCATATCCTGTCGACGAGATGATTCGACATCTTGGAAGCAGAATTGATCGTACTCGAGATTTAGTTCAGTCAGACAATCCAGACAATGCTCGTGAAATGGCTGAGAGAAACAGTTTGTTACTAAGTAGGTTTTTGACATCTCGAGGCATCCGAAGAGAGCAAAATGTCTGGACACCCCCTGATGGTGCAGTGGGTTTGACACAGAATAATCCTCCTGATGCAGCAGGGGATAGCCGAAGGATCCATTCCCGCTCACTTCGAAGAACGCAATCATATAGAGCAAGATTTGCATCAGCACTGAGTAGTTCTGCTGAAGGGATAGTGGATGCATACTTCAGCGTCCAACCATTTGGTAGAAACCAAGAACAACCTCCTCCATTTGATGACAGAGATTCATTTTCAAGCATTGGCGCTGTCATAAATTCAGAGAGTCAAGTGGACAGTGCCGTAGAAATTGATTCCATGGTATCCTTGTCAACTTCGTCTTCTAGGAGGAGAATTGATGCTTCAAGAGTGTCTGATGTGGACAGCGGAGATTCTCGTGCTCCAAGGCGAAGACGTTTGAACTGA 1335 0.4592 MGDEISDAMNLDLNLGPGPEPLVGSTVDEAMNLDDWIEDPFHRFNEAVRLRSRQRWRWRHHLAILPPPPPSAAAFHVPEVPPHLHFHIPPEARNISMEFNQYLVNSGHGSPLQAGEGSVAVEERIEVEMPKVCEHNNGVMEDETAEKKDDVDTGSGNDRDFFDCNICLDLAKDPVVTCCGHLFCWPCLYRWVHLHSDAKECPVCKGEVILKNVTPIYGRGNNVRVPEEDVTLKIPLRPQARRVESLRQTLQRNPFAYPVDEMIRHLGSRIDRTRDLVQSDNPDNAREMAERNSLLLSRFLTSRGIRREQNVWTPPDGAVGLTQNNPPDAAGDSRRIHSRSLRRTQSYRARFASALSSSAEGIVDAYFSVQPFGRNQEQPPPFDDRDSFSSIGAVINSESQVDSAVEIDSMVSLSTSSSRRRIDASRVSDVDSGDSRAPRRRRLN* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0190 444 MobiDBLite consensus disorder prediction 412 444 - -
Lan2g0190 444 SUPERFAMILY RING/U-box 159 217 - -
Lan2g0190 444 CDD RING-HC_AtRMA_like 162 206 - -
Lan2g0190 444 MobiDBLite consensus disorder prediction 310 333 - -
Lan2g0190 444 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 26 444 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lan2g0190 444 MobiDBLite consensus disorder prediction 422 444 - -
Lan2g0190 444 Pfam Zinc finger, C3HC4 type (RING finger) 164 204 IPR018957 GO:0046872
Lan2g0190 444 SMART ring_2 164 204 IPR001841 -
Lan2g0190 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 249 IPR013083 -
Lan2g0190 444 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
Lan2g0190 444 PANTHER OS01G0830200 PROTEIN 26 444 - -
Lan2g0190 444 ProSitePatterns Zinc finger RING-type signature. 179 188 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0190 Lan-Chr2 1605377 1607436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0190 1 435 C3H Transcription Factor Family AT3G58030 49.231 1.85e-126 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0190 K10666 - gmx:100811099 583.948