Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0176 ATGGCTTCATCATCCAGCAGCGGTTTAACATTCAAGCTTCACCCTCTTGTTATCGTCAACATCTCAGACCATTACACAAGGGTCAAGTCTCAGATGAACCCACCAATATCACATCACAACACTACCACCACCACCAATGGCGGCGACGCTGTCGCTTCTTCTGCTCCGCCGCGGGTATATGGTTGCGTCATAGGGGTTCAGAAGGGTCGCACCGTTGAGATCTTCAATAGCTTTGAGCTGCTCTATGATTCATCAAATAATTCTCTCGATCGTCCGTTTCTTGAGAAGAAGCAAGAGCTCTATAAAAAGGTTTTCCCACACTTCTACATACTGGGATGGTATTCGACTGGGAGTGATGCAGAAGAATCAGATATGCTTATTCACAAAGCTCTGATGGATATCAATGAAAGTCCAGTTTATCTTCTTCTCAATCCTTCAATCAATCATTCTCAGAAGGATCTCCCAGTCAGTATTTTCGAAAGTGAACTGCATGTAATAGAAGGGGTTCCACAACTTATCTTTGTTCGCTCAAGTTATACTATTGAGACTGTTGAAGCAGAACGGATCTCTGTTGATCATGTTGCACATCTTAAGCCATCTGATGGTGGTTCGGCTGCTACACAATTGGCTGCTCACCTTACTGGTATACACAGTGCTATCAAAATGCTTCATAGTAGAATTAAGGTGTTACATCATTATCTTCTTGCAATGCAAAAAGGTGATGTTCCTTGTGAGAATTCACTGTTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCTGGGAAATTTCAAGATGATTTTATAATGGAATACAATGACACCTTATTGATTAGTTACCTTGCAATGCTAACCAACTGCTCAAGTGCTACAAATGAATTGGTGGACAAATTCAATACTGCATATGACAGGCATAGCAGAAGAGGTGGACGAACTGCTTTTATGTGA 957 0.4169 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPPISHHNTTTTTNGGDAVASSAPPRVYGCVIGVQKGRTVEIFNSFELLYDSSNNSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMLIHKALMDINESPVYLLLNPSINHSQKDLPVSIFESELHVIEGVPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFIMEYNDTLLISYLAMLTNCSSATNELVDKFNTAYDRHSRRGGRTAFM* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0176 318 SMART pad1_6 10 164 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lan2g0176 318 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 318 - -
Lan2g0176 318 MobiDBLite consensus disorder prediction 30 51 - -
Lan2g0176 318 Gene3D Cytidine Deaminase, domain 2 1 199 - -
Lan2g0176 318 ProSiteProfiles MPN domain profile. 11 165 IPR037518 -
Lan2g0176 318 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 137 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lan2g0176 318 Pfam Maintenance of mitochondrial structure and function 185 299 IPR024969 -
Lan2g0176 318 CDD MPN_CSN6 9 314 IPR033859 GO:0000338|GO:0008180
Lan2g0176 318 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0176 Lan-Chr2 1478069 1486393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0176 2 269 Eukaryotic Initiation Factors Gene Family AT2G39990 22.344 1.06e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0176 K12179 - gmx:100797079 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1094 4 16408439 16415309 Lan2g0176 2 1478069 1486393 LSH
Lan2g0176 2 1478069 1486393 Lan16g0780 16 13707107 13715972 LSH