Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0172 ATGGGTTATACATGTGATTTTTGTGGAGACCAGAGGTCCATGGTGTACTGCCGCTCCGATGCTGCATGCTTATGTTTGTCATGTGATAGAAACGTTCACTCGGCTAACGCCCTTTCTAAGCGTCACTCGCGAACCCTTTTATGTGAGAGATGTAATTCACAACCTGCCTCTGTGAGGTGCTCCGAAGAGAAAGTTTCGCTTTGTCAAAATTGTGATTGGTTGGGTCATGGTTCCTCGACATCTTCTTCAACACATAAGAGACAAACAATCAATTGCTACTCCGGCTGCCCGTCATCCGAAGAACTGTCTTCTATATGGTCATTTGTCTTAGATATCCCTTCTACGAGTGGATCTTCATGTGAGCAGGAACTAGGTTTAATGACTATTAACGAGAACAGCATCAAGAGTTCTTCGGTTGCTCCAGAAAATCAGAATGGGACTGGTTCAGATCAAGTTAATGATCTACCCGGTAAGGATAAGTATCGGGATGGTGCTTCTTCTAAGGCCGAGTCAAGCACAAAACCTCCCGTTCTGGACCATCCAGCTGGAACTTCCAATCAATGTCTGCCGAAGTTCTACTGTCCTGGAACAAAATGCCCTTCAATATGTGAAGATAATATGTATCCCGATTTTGACATGGATGAAGTGGATCTAAATCTTGAGAACTATGATGAACTATTTGGTATGACTCTCACTCATTCTGAAGACCTTTTTGAAAATGGTGGATTTGATAGCTTGTTTGGGACAAATGACATATCTGCTGAAGGTTCCGATTGTATGGGCGCTGGTGCTGCCGAGGGGTCATCGGTTGAACTAGTCAATGCAATGCAACCGGCATGCAGCAATGCAGAATCTGCCGATTCCATATTGAGTACGAAAACTGAACCAATCATTTGTTTTACATCAAGGCAAGTCCCATCAAACATTTCTTTTTGTGGAATTGCGGGAGAGAGTAATGCTGGAGACTATCAAGATTGCGGGGCTTCTTCAATGCTTCACATGGAAGAGCCTCATTGGCATCCTCGTCCCGAGAATTCCCTGCACTCATCTGCTAACCGCAATAATGCTGTCTTGCGTTACAAGGAAAAGAAGAAGATACGAAAGTTCGACAAAAGAGTGAGGTATGCCTCTCGCAAAGAACGGGCTGATGTCAGAAAGCGTGTGAAGGGCCGATTCGTCAAAGTTGGTGATGCCTACGATTACGACCCTTTGGGTCCAACCAGAAGCTACTGA 1233 0.4477 MGYTCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPASVRCSEEKVSLCQNCDWLGHGSSTSSSTHKRQTINCYSGCPSSEELSSIWSFVLDIPSTSGSSCEQELGLMTINENSIKSSSVAPENQNGTGSDQVNDLPGKDKYRDGASSKAESSTKPPVLDHPAGTSNQCLPKFYCPGTKCPSICEDNMYPDFDMDEVDLNLENYDELFGMTLTHSEDLFENGGFDSLFGTNDISAEGSDCMGAGAAEGSSVELVNAMQPACSNAESADSILSTKTEPIICFTSRQVPSNISFCGIAGESNAGDYQDCGASSMLHMEEPHWHPRPENSLHSSANRNNAVLRYKEKKKIRKFDKRVRYASRKERADVRKRVKGRFVKVGDAYDYDPLGPTRSY* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0172 410 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lan2g0172 410 SMART bboxneu5 48 90 IPR000315 GO:0008270
Lan2g0172 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 410 - -
Lan2g0172 410 MobiDBLite consensus disorder prediction 136 152 - -
Lan2g0172 410 Pfam CCT motif 353 395 IPR010402 GO:0005515
Lan2g0172 410 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lan2g0172 410 CDD Bbox1_BBX-like 5 47 - -
Lan2g0172 410 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Lan2g0172 410 MobiDBLite consensus disorder prediction 136 181 - -
Lan2g0172 410 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Lan2g0172 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0172 Lan-Chr2 1452947 1457925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0172 1 410 C2C2-CO-like Transcription Factor Family AT5G48250 57.041 1.18e-154 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan2g0172 CCT 2.3e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0172 - - gmx:100796748 608.986