Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0160 ATGGCATCTCTCAGGTTTTCTTCTGCTAAACGATTACGGAGTTCGATTCAGCATTCTTTGAACCTTGAATTAGTTCAACAATACCACCATAGTATTATGCCTATGAACCATGCAACAATTGCAAGGTTGCCAAGTGATTCAATGAGAAATCTTTATTCCATAGAAGAGATAAAGCCATCTCGAAGTTTCGCTAGGAATAAGTTCAGTAATTTGGCTTCTGAATCTCTTGTTAGTAGCACCAAAATCAGTGCATCATTTAATGCTAAGTTCTCTGGCTTTGGTTTCCGGAGTACTCTTCCCTTTGCTTCTTCGATGACCAGCGTGTTGAATTGCCGAAAATATTCATCATCTGTGGGTGGGAAAGGAAACAGTGATGGTGGCACTGACATTCAAGCTGGTTCTGGTGCAAGTGACACTAATGTTTTCGGTGATTCAGTTGTTGCTGGTGATTGGCCTGAGAAGATTAGAGATGCTTGGAAGAATGTGGTAGAGACCGCAACACATGCTGGGGAAAAGGTAAAAGATTCCTATGATGAGCTGACTCCATATGGTCAACAGTTGCTTGATTCAAATCCATATCTTAAAGAGGTGGTTATTCCGGTTGGCGGTACATTAACAGCTACTTTAATAGCTTGGGCTGTGATGCCTAAGATTTTGAGGAAATTTCACCAATATGCATTGCAAAGTCCCGTTTCTGTGTTTCCTGGTAGCACATCTGGGGAGCCAGTTCTTTATGAGAAAAGCTTTTGGGGTGCTCTAGAAGACCCAGTGCGTTATTTAGTTACCTTCATAGCATTCTCACAAATAGGTGTAATGGTAGCTCCCACAACTATAGCCTCACAATATCTTGCACCAGCTTGGAGGGGTGCAGTGATACTTTCATTTGTATGGTTTATCCATAGATGGAAAACAAATGTTTTTGCACGTACGTTGTCTGGTAAAGCATTACTTGGGCTTGATAGGGAAAAATTGCTCGCTCTAGACAAAATATCATCTATTGGTCTATTTGTGATTGGCATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAGTCTATTGTAACCGTTGGTGGTATAGGAGGAGTTGCTACTGCTTTTGCTGCGAAAGACATTCTAGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCAAGGCCCTTTTCAATTGGAGATACGATAAAAGCTGGCTCGGTAGAAGGTCAAGTGATGGAAATGGGTCTTACTACTACGTCATTGCTGAGTGCTGAGAAGTTCCCAGTGATAGTGCCAAACTCATTTTTTTCTAGCCAGGTAATAGTGAACAAGTCCCGCGCCGAATATCATGCTATTATTACCAAAATTCCACTGCAGATTGAGGATTTAAGTAAGATTCCCCAGATATCGGATGATGTGAAGACCATGCTGAGATCAAATGCGAAGGTTTTCTTAGGGAAAGATGTTCCCTATTGTTTCTTGTCCCGTATTGAAAGTTCATTTGCAGAATTGACACTTGGATACAACCTCAAACACATGCGCAAAGATGAGTTATACTCTGCCGAACAAGATGTTCTTCTGCAAGCAGTTCAGATTATTAAGAATCATGGGGTGGCTCTTGGCAGCACATTCCAAGACATTTCTAATAAGTGA 1629 0.4156 MASLRFSSAKRLRSSIQHSLNLELVQQYHHSIMPMNHATIARLPSDSMRNLYSIEEIKPSRSFARNKFSNLASESLVSSTKISASFNAKFSGFGFRSTLPFASSMTSVLNCRKYSSSVGGKGNSDGGTDIQAGSGASDTNVFGDSVVAGDWPEKIRDAWKNVVETATHAGEKVKDSYDELTPYGQQLLDSNPYLKEVVIPVGGTLTATLIAWAVMPKILRKFHQYALQSPVSVFPGSTSGEPVLYEKSFWGALEDPVRYLVTFIAFSQIGVMVAPTTIASQYLAPAWRGAVILSFVWFIHRWKTNVFARTLSGKALLGLDREKLLALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFSRPFSIGDTIKAGSVEGQVMEMGLTTTSLLSAEKFPVIVPNSFFSSQVIVNKSRAEYHAIITKIPLQIEDLSKIPQISDDVKTMLRSNAKVFLGKDVPYCFLSRIESSFAELTLGYNLKHMRKDELYSAEQDVLLQAVQIIKNHGVALGSTFQDISNK* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0160 542 Gene3D - 387 435 IPR023408 -
Lan2g0160 542 Gene3D - 287 386 - -
Lan2g0160 542 SUPERFAMILY Sm-like ribonucleoproteins 371 436 IPR010920 -
Lan2g0160 542 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 69 538 - -
Lan2g0160 542 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 69 538 - -
Lan2g0160 542 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 286 370 IPR011014 GO:0016020
Lan2g0160 542 Pfam Mechanosensitive ion channel 329 531 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0160 Lan-Chr2 1356561 1361855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0160 151 538 Mechanosensitive Ion Channel Family AT4G00290 69.072 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0160 K22047 - gmx:100789047 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0711 9 10965387 10969476 Lan2g0160 2 1356561 1361855 LSH