Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0153 ATGTTCTTCTGCACATGCACATATGAAATTTGTTCTCTTCTACTCACCAAACAAAAAACATCATCATCTATGAATCTATCTTTAACTAGAACAACATTACAAAACCTTAAACAACTTCAATGGACAAGAACTCAATCCTCACACGAAAAACTCCATAATCTACTTAACCAATGCACCAACCTCAACCACCTTCACCAAATCCAAGCTTTTATGCTCACAACAGCTCTTGATAAAGACAACATTTTCATCTCTCAACTTATCCACACTTCAGCTTCTCTCGGCTTTTCTTCTTTCTCTTATTCCCTTTTCACTTATAATCACAGACCCAACATTTTTCTCTATAACAATACCATTTGGGCACTCTCCAAATTCAATGCCCCACGTGCTATTTTGTTGTTTAAAGGAATTCGGTTACTTGGGTTGAAGCCTGATAACTATTCTTTTCCTTTTGTTTTGAAAGCTGTTGTTCATTTGTTGGATGATGTTGTTGGTAGACAGATTCATTGTCAAGCTGTTTCTTGTGGCTTGGATTTGGATTGCAGTGTTGTTACGTCGCTTGTTCAGATGTATTGTTCTTGCTTGCATGTTTCTTATGCGCGGAAGCTGTTCGATGAAATTACTTCTAAACGTGTTTCGCTCTGGAATGCTATGATTGCAGGTTATGCTAAACTCGGGGATATGGCCAATGCCCGTAGTTTGTTTGATTGTATGCCTGAAAAGGATAAGGATGTCGTTTCATGGACTGCAGTTATTTCAGGTTACACACAGGCTGATAATCCGAATCAGGCCATTGCACTGTTCCACAGAATGCAGCTTCATAATGTGAATCCAGATGAAATTGCGATTTTGGCTGTGCTCTCTGCTTGTGCTGATTTAGGTGCTCTTGAGTTAGGGGAGTGGATTCACAACTACATTGAAAAGCATAAGTTGCATAAGATTGTCCCTCTTTGCAACTCTCTTATAGATATGTATGCAAAGTCAGGTAATATAAATAAAGCACTACGAGTGTTTAAGAATATGAGGAATAAAACAGTAATAACATGGACAACAATGATTGCTGGACTTGCTTTACATGGTCTAGGGAAGGAGGCCCTTGGTATATTTTCTTGCATGGAAAAGGCTAGAGTGAAGCCGAATGAAGTCACATTCATTGCTGTCCTTTCTGCCTGTAGCCATGTTGGATTGGTTGAAATAGGCCGCGATTATTTTGCGTCGATGAAGTCCAAATATGGAATTGAACCAAAGATTGAGCACTATGGCTGCATGATTGATTTGCTTGGGCGTGCTGGCTATCTTCAAGAAGCAAAGGAGCTCGTTAGGTTGATGCCCTATGAAGCGAACGCAGCTGTATGGGGATCTCTTCTTGCTGCTTCAACTAGATGTGGTGATGCTGAGCTTGCAGCTGAAGCTTTGTGTCATTTAATTATGCTAGAGCCCCATAATAGTGGAAACTATTCACTCTTATCGAATACGTATGCTGCACTTGGTAGGTGGAGTGAATCTCGGATTGTGAGAAAGGATATGCGGAATGCAGGTGTGGAAAAGAAGCCCGGTGTGAGTTTTATTGAGGTGAACAACAGAGTATATGAATTCATTGCTGGCGATAAGTTAGACGTGTCCTGTGTTGGCACATTTGATGTCCTACATAGCATAAATGAGCAACTGAAGATGGTTTGTCCGAAAACGGCACATAGAGGACCACTAGATGTTGATGACTGA 1719 0.4055 MFFCTCTYEICSLLLTKQKTSSSMNLSLTRTTLQNLKQLQWTRTQSSHEKLHNLLNQCTNLNHLHQIQAFMLTTALDKDNIFISQLIHTSASLGFSSFSYSLFTYNHRPNIFLYNNTIWALSKFNAPRAILLFKGIRLLGLKPDNYSFPFVLKAVVHLLDDVVGRQIHCQAVSCGLDLDCSVVTSLVQMYCSCLHVSYARKLFDEITSKRVSLWNAMIAGYAKLGDMANARSLFDCMPEKDKDVVSWTAVISGYTQADNPNQAIALFHRMQLHNVNPDEIAILAVLSACADLGALELGEWIHNYIEKHKLHKIVPLCNSLIDMYAKSGNINKALRVFKNMRNKTVITWTTMIAGLALHGLGKEALGIFSCMEKARVKPNEVTFIAVLSACSHVGLVEIGRDYFASMKSKYGIEPKIEHYGCMIDLLGRAGYLQEAKELVRLMPYEANAAVWGSLLAASTRCGDAELAAEALCHLIMLEPHNSGNYSLLSNTYAALGRWSESRIVRKDMRNAGVEKKPGVSFIEVNNRVYEFIAGDKLDVSCVGTFDVLHSINEQLKMVCPKTAHRGPLDVDD* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0153 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Lan2g0153 572 Gene3D Tetratricopeptide repeat domain 173 307 IPR011990 GO:0005515
Lan2g0153 572 Gene3D Tetratricopeptide repeat domain 315 531 IPR011990 GO:0005515
Lan2g0153 572 SUPERFAMILY TPR-like 439 514 IPR011990 GO:0005515
Lan2g0153 572 Pfam PPR repeat 183 210 IPR002885 -
Lan2g0153 572 Pfam PPR repeat 317 343 IPR002885 -
Lan2g0153 572 Pfam PPR repeat 213 240 IPR002885 -
Lan2g0153 572 Pfam PPR repeat 418 442 IPR002885 -
Lan2g0153 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Lan2g0153 572 Pfam PPR repeat family 344 391 IPR002885 -
Lan2g0153 572 Pfam PPR repeat family 242 290 IPR002885 -
Lan2g0153 572 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 40 559 - -
Lan2g0153 572 Pfam E motif 463 523 IPR046848 -
Lan2g0153 572 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 40 559 - -
Lan2g0153 572 TIGRFAM PPR: pentatricopeptide repeat domain 213 238 IPR002885 -
Lan2g0153 572 TIGRFAM PPR: pentatricopeptide repeat domain 317 342 IPR002885 -
Lan2g0153 572 TIGRFAM PPR: pentatricopeptide repeat domain 245 279 IPR002885 -
Lan2g0153 572 TIGRFAM PPR: pentatricopeptide repeat domain 346 380 IPR002885 -
Lan2g0153 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 343 IPR002885 -
Lan2g0153 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 240 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0153 Lan-Chr2 1297177 1299417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0153 126 556 Glycoside Hydrolase AT3G49170 34.954 4.78e-76 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0153 - - gmx:100808631 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1133 11 15488664 15501831 Lan2g0153 2 1297177 1299417 LSH