Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0130 ATGTTGGTGGATGAAATGGATGTTAGCTCTGAGTGGAGTTGGGAGCAGGATAAAGCATTTGAAAGTGCCTTGGTAAATCATCCGGAGGATGCCCCTGATCGATGGGAGAAGATTGCGACTGATGTACCCGGGAAAACAATAGAAGAAATTAAACAACATTATGAGCTCTTGGTTGAAGATATTAACCAGATCGAATCTTGTTGTGTGCCTCTACCGTCTTATAATTCTTCTTCCGATGGCTCACCAAGCCATGCTAGTAGTGTTGAAGGAGCTGGCGAGAAGGGTGGCCGTCTTAATAGTGATTCTAATCATGGAACTAAGACATCAAGATCAGACCTGGAACGACGAAAGGGTATTGCTTGGACAGAGGATGAACACAGGTTATTTCTTCTTGGCTTGGAAAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGGAACTTCGTGTTGACAAGAAACCCGACACAAGTAGCAAGCCATGCACAAAAATACTTCATTCGTTTGAACTCGATGAATAAAGATAGAAGGCGATCAAGCATACACGATATTACGAGTGTCAACAATGGAGATGTTTCAGCATCTCAAGTGCCAATTACAGGTCAAACCAATGATTCTGAAGGCAACTCTACTGGCAAACCAGGCAAAGAAGCACAAATGCCTCCAGCCTCAATCAGAGTACCAAGTATCGGAATACATGCCGCGCCTGCCATCGGGAAACCTATAGGAGGACCACTAGTATCTGCTGTTGGAACCCCGATAAATCTTCCCGCCGCTGGACACATGGCATATGGTGTCCGAGCTTCGATTTCTGGTGCACCAATGAACATTAGTCCTATGGCATACCCTATGTCACACACATCTGCTCCTCACAGGTAA 876 0.4498 MLVDEMDVSSEWSWEQDKAFESALVNHPEDAPDRWEKIATDVPGKTIEEIKQHYELLVEDINQIESCCVPLPSYNSSSDGSPSHASSVEGAGEKGGRLNSDSNHGTKTSRSDLERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVLTRNPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSASQVPITGQTNDSEGNSTGKPGKEAQMPPASIRVPSIGIHAAPAIGKPIGGPLVSAVGTPINLPAAGHMAYGVRASISGAPMNISPMAYPMSHTSAPHR* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0130 291 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 117 167 IPR006447 GO:0003677
Lan2g0130 291 CDD SANT 11 58 IPR001005 -
Lan2g0130 291 CDD SANT 120 165 IPR001005 -
Lan2g0130 291 MobiDBLite consensus disorder prediction 74 114 - -
Lan2g0130 291 ProSiteProfiles Myb-like domain profile. 121 165 IPR001005 -
Lan2g0130 291 SMART sant 117 167 IPR001005 -
Lan2g0130 291 SMART sant 8 60 IPR001005 -
Lan2g0130 291 SUPERFAMILY Homeodomain-like 10 65 IPR009057 -
Lan2g0130 291 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Lan2g0130 291 Gene3D - 119 171 - -
Lan2g0130 291 Gene3D - 10 57 - -
Lan2g0130 291 ProSiteProfiles SANT domain profile. 121 169 IPR017884 -
Lan2g0130 291 SUPERFAMILY Homeodomain-like 115 170 IPR009057 -
Lan2g0130 291 PANTHER TRANSCRIPTION FACTOR KUA1 6 279 - -
Lan2g0130 291 MobiDBLite consensus disorder prediction 182 212 - -
Lan2g0130 291 MobiDBLite consensus disorder prediction 181 220 - -
Lan2g0130 291 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 6 279 - -
Lan2g0130 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 169 IPR017930 -
Lan2g0130 291 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Lan2g0130 291 Pfam Myb-like DNA-binding domain 120 165 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0130 Lan-Chr2 1108297 1114882 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan2g0130 Myb_DNA-binding 3.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0130 - - ccaj:109792793 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1085 11 13965049 13972721 Lan2g0130 2 1108297 1114882 LSH
Lan2g0130 2 1108297 1114882 Lan9g0724 9 11302162 11310593 LSH