Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0110 ATGGCGTTCTTCAATAAGATTGGGAACCTACTGAAGCATTCTGCTGCCAAGCACATCAATCAAGATTTGTCTGCATCTACTCCTTCAATTTTCCAGGCAATTAGATCCATGTCATCTGCAAAGGTTTTTGTTGGAGGTATTTCATATAGCACAGATGATACGAGTCTGAGGGAATCATTTGCTCGCTATGGAGAAGTGCTTGATGCAAAGGTTATCATAGATCGTGAGACAGGCAGGTCCAGAGGTTTTGGCTTCATAACGTATGCAACAAGTGAGGATGCATCTTCTGCCATTCAGGGCATGGATGGTCAGGATCTTCATGGTCGGAGGGTTAGGGTGAATTATGCTACAGAAAGAGAACGTCCAGGGTTTGGTGGTGGTGGCGGCGGCTATGGTGGTGGCGGCGGTGGCTATGGTGGTGATGGAGGTGATGGTGGTAGAAGTGTGGACTCTGGTGCTAGCAATTACCAGTTCAATGAAAACTCTGGTGCGGACCTCGGCTCTGCTAGCGGTGAACCCAGCAGCAATGCCAGCTTCGGGTATGATGGTCAATTTGGTAGCAACCAAAATGACAGTACAGTCACAAACAATGGTGAATCTACTGAGCCATTGGAAGAAAATCATCCAAGAGAAAACAATGATGAAGCTAATGACTATGCCCAGAATCGAGGATGA 675 0.4681 MAFFNKIGNLLKHSAAKHINQDLSASTPSIFQAIRSMSSAKVFVGGISYSTDDTSLRESFARYGEVLDAKVIIDRETGRSRGFGFITYATSEDASSAIQGMDGQDLHGRRVRVNYATERERPGFGGGGGGYGGGGGGYGGDGGDGGRSVDSGASNYQFNENSGADLGSASGEPSSNASFGYDGQFGSNQNDSTVTNNGESTEPLEENHPRENNDEANDYAQNRG* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0110 224 MobiDBLite consensus disorder prediction 203 218 - -
Lan2g0110 224 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 181 - -
Lan2g0110 224 SMART rrm1_1 41 114 IPR000504 GO:0003723
Lan2g0110 224 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 181 - -
Lan2g0110 224 MobiDBLite consensus disorder prediction 115 224 - -
Lan2g0110 224 MobiDBLite consensus disorder prediction 150 202 - -
Lan2g0110 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Lan2g0110 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Lan2g0110 224 Gene3D - 15 153 IPR012677 -
Lan2g0110 224 SUPERFAMILY RNA-binding domain, RBD 24 147 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0110 Lan-Chr2 953987 956687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0110 42 120 Eukaryotic Initiation Factors Gene Family AT1G49760 35.443 3.52e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0110 K12741 - gmx:100818300 264.233