Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0105 ATGGGTTGTGTTTGTTCTTGTTTCAGAGTTGATGATTTCGAAGATTATATGAATCCAAATAATCCTGCATATAGGAACTGCTCGTGTCTTGGTTGCTTCACGGAGAACCTTTTGAATGTGTATACGTTGATATTCCGTAGAGGGGAAGTGCATGCAATTCCCTCTTCTATACAGGAAGCAGCATCTATGACTTCTACAGCATCACTTGATAATTCAATGTCTGATATATACCGTTCTCTTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGGTTTTCCGATCACAGCGTGATGGACTAGTTTCAAGATGTGAGAAAGGTTCAAGTCATTCACACGAGGAATCAGAACCTCTAAGAAGTGATGTAGACGTGGACCCAGAATCTTTAAATTCAGCTGGCAAAAGGAACGATAATGCCCGTGAAGATGGATCAAAAGAATACTCTTCTCAATCCACACTAAGACTTTCATCTGCAAAACTTACAACTGGAGCTGGGCTCGTCTATTCTTCGTCAGAAGAGGAGGATGTGTGCCCAACTTGTCTTGAAGAATACACCGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTCCATCTTGGTTGCATTTATGAGTGGATGGAACGGAGTGAGACCTGTCCAGTTTGTGGAAAGGTGATGGCATTCGATGAATCGGAATAA 684 0.424 MGCVCSCFRVDDFEDYMNPNNPAYRNCSCLGCFTENLLNVYTLIFRRGEVHAIPSSIQEAASMTSTASLDNSMSDIYRSLPRPLPYDADPRVFRSQRDGLVSRCEKGSSHSHEESEPLRSDVDVDPESLNSAGKRNDNAREDGSKEYSSQSTLRLSSAKLTTGAGLVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSETCPVCGKVMAFDESE* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0105 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 222 IPR013083 -
Lan2g0105 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Lan2g0105 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
Lan2g0105 227 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Lan2g0105 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Lan2g0105 227 SUPERFAMILY RING/U-box 172 223 - -
Lan2g0105 227 MobiDBLite consensus disorder prediction 104 154 - -
Lan2g0105 227 SMART ring_2 177 217 IPR001841 -
Lan2g0105 227 MobiDBLite consensus disorder prediction 104 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0105 Lan-Chr2 909300 913420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0105 1 226 C3H Transcription Factor Family AT5G15790 59.740 3.92e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0105 - - gmx:100788192 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0109 9 1310341 1315541 Lan2g0105 2 909300 913420 LSH
Lan2g0105 2 909300 913420 Lan8g0158 8 2624595 2628945 LSH