Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0080 ATGGCAGAAGGAGAAGAAGAAGAAGAAGATATGAACATTGATAGAAGAGAAGAAGGAACACCAATTCGATACCTCCCACTCGATCATCTCTACTCCGCCACGTCACCATGCCGACGTGTCACCGTCATGTCTAAGAAGGTTAAAGCTCAACAATCGCAAAACGACAACGTCGTTTTGCTACTAACCAAAACGACATCGTCTTTACCACCACCTCATCTTCCGATTCTGAAACCTAAACCACCGCTTCTATATGTTTACTCTCGCCGAAGACGCAAGAGAGACTCCAAAACGAAGTCGTTTTATGATTCATTGAACGATCGAGTTAACTTCGATGAAGCTAGGTTTAACAAGAAGAGGAGAATTGGGAATAGTGAATTGGAGAAATTAGCTGTGGATTTTAGTTCGTTTAGTAGTGGTAATTTTGATGCGTCTAGATTTAGAGAATGTCGCAATTCTGAGAAGAAAATAGGTGCTAGTTCTTTCAAGAATTTTCCCAAGTTAGTTTCGGAATCTCGTTCTTTGAAGAAATGGGCAGGGTTGAGTTTTGATAATGCTGATCCAGAGTCATTCATTGGATTACGATGCAAGGTTTATTGGCCTATGGATGATAAGTCATATTCTGGCTATGTCAAAGGTTATGATACAGAAACTAAGATTCATAATGTCAAGTATGATGATGGTGATGAGGAAAATTTGATACTTTCAAAAGAAAATGTAAAATTCCATGTTTCTCATGACGATGTAAAACATTTGAATCTGAGTTATGCCAAAGTTCGTGACAGTAATGTCTCTGATTATGATATTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGTCAAGATTTTGAGCCTGGGGATATTGTATGGGCCAAGCTAACAGGCTACGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTAGCAACTGCAAGGGTTTGAAAATGCTTTTAGGAGGAAGATCGGTTCCTGTCCAATTTTTTGGAACTCATGACTTCGCAAGGGTTAGAGTGCAGCATGTGAAATCATTTATCAGCGGACTTCTTACTGACCTACACTCAAAGTGCAAGAAACTTAGTTTTATTGAAGGTATAGAAGAGGCAAAAAGGTATTTAGGTGAACAAAGGCTTCCTCGGGCGATGATCGAGTTGCAAAAAGGATGTATAGTTGATGACTGTAACAATGTCAGTGGAGAAGATGGGGGATATACGAATTCCGATGAAGATCGTTTAAATGACAAAGGAACTTGGATGGAAATGGAAAGCACTTCAACTTTTCCTTATGAAGTAGGAGACATGCAAATTAAAAGCCTTGGAAAAATAGTTAAAGATTCTGCATCTTTCAGGGATGGAAGATCCATCTGGCCCGAAGGCTACACAGCAGTGAGGAAGTTTACTTCAGTTACTGACCCTAAAGTATCTGCCCCTTACAAGATGGAGGTGTTGAGAGATCCAGAATCCAAGGACCGACCTCTTTTCAGAGTGACGATTGATGGTGGTGAGCAGTTCAATGGTTGTACACCATCTGCTTGCTGGAACCAAATATACAAAAGGATAAACAAAATGGAAAATGATGATTCTGAAGGATCTGTTGCAGAAGGTGGGGTAGAAAGGGGCTACAAATCTGGGTCTGATATGTTTGGTTTCTCCAATCCCAAAGTGTCTAAACTTATCCAGTGTTGTTATTTCCAGGGATTATCTAAATCCAAAATCTCTTCTAAGAACTCAATCTCGAAGTCAGGTTCCAGAAGATATAATGGCTTGCCTCTTGGTTATAGGCAGGTTCATATTAATTGGTTTGATCTTGATAAGTGCAATGTGTGCCACATGGATGAGGAGTACGAGAACAATCTATTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGTTATGGAGAACTTGAACCTGTTAATGGAGTGCTATGGTTATGCAAATTATGTCGTTTTGGTTCTGCTTCTCCACCACCTTGCTGTTTATGTCCACTCATAGGAGGTGCAATGAAGCCTACAACAGATGGCCGGTGGGCTCATTTAGCTTGTGCAATGTGGATACCTGAAACTTGCTTGGCTGATGTTAAGAGAATGGAGCCTATTGATGGATTGGATAGAATCAGCAAGGACCGCTGGAAGTTGTTATGTAGCATATGTGGGGTTTCTTATGGTGCCTGCATCCAATGTTCAAACAATTCGTGTCGAGTAGCATATCACCCACTTTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTCGAGAATGAGGACAGGCTCTATCTACTATCTTTTGATGATGATGAAGATCAGTGCATACGCCTACTCTCTTTCTGCAAGAAACATAGGCAGCCATCTATTGAACCTTCTTTTGCCGATGGTCGTATTGCTCGAGTTGTCGGTCCATGTTCAGACTATGAACCACCACCCAATCCGTCTGGTTGTGCTCGAACTGAGCCATACAATTACTTCGGAAGGAGAGGCCGAAAGGAACCTGAAGCACTTGCAGCTGCATCATTGAAACGTTCCTTTGTAGAGAATCAACCTTACTTGGTTGGTGGATACTGTCAACATGGATCATCAAACAACATAGAGACTTCTGGCAGAGGAGTCTGTGCTAAATTCTTTTGTAGCCAGGAAAGGCTGAGAACCTCTCTGATTGATACTTCGAACAACATACTTTCTACTGCCGAGAAATATAAGTACATGAGGGAAACCTTTCGGAAACGGCTAGCATTTGGGAAATCAAGAATACATGGATTTGGCATCTTTGCAAAGCACCCACATAAAGGTGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCTACCATAGCTGATCGAAGAGAACACTTTATATACAATTCATTAGTGGGTGCTGGGACATATATGTTTAGGATTGATGATGAGAGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATCTAATTAATCATTCTTGTGCACCAAATTGCTATTCAAGAGTTATCAGTGTTAATGGCGATGAACATATTATAATATTTGCAAAGAGAGACATTAAACAATGGGAAGAGCTCACATATGATTACAGATTTTTCTCAATTGATGAACGGCTTCCTTGTTACTGTGGCTTCCCAAAATGCCGAGGTATAGTAAATGATACTGAGGCAGAAGAGCGAGCTGCTAAGCTATACGCACCTCGAAGCGATTTAACAGATTGGAGAGGAGAATGA 3222 0.4122 MAEGEEEEEDMNIDRREEGTPIRYLPLDHLYSATSPCRRVTVMSKKVKAQQSQNDNVVLLLTKTTSSLPPPHLPILKPKPPLLYVYSRRRRKRDSKTKSFYDSLNDRVNFDEARFNKKRRIGNSELEKLAVDFSSFSSGNFDASRFRECRNSEKKIGASSFKNFPKLVSESRSLKKWAGLSFDNADPESFIGLRCKVYWPMDDKSYSGYVKGYDTETKIHNVKYDDGDEENLILSKENVKFHVSHDDVKHLNLSYAKVRDSNVSDYDIEEMLALAASLDDCQDFEPGDIVWAKLTGYAMWPAVVLDESLASNCKGLKMLLGGRSVPVQFFGTHDFARVRVQHVKSFISGLLTDLHSKCKKLSFIEGIEEAKRYLGEQRLPRAMIELQKGCIVDDCNNVSGEDGGYTNSDEDRLNDKGTWMEMESTSTFPYEVGDMQIKSLGKIVKDSASFRDGRSIWPEGYTAVRKFTSVTDPKVSAPYKMEVLRDPESKDRPLFRVTIDGGEQFNGCTPSACWNQIYKRINKMENDDSEGSVAEGGVERGYKSGSDMFGFSNPKVSKLIQCCYFQGLSKSKISSKNSISKSGSRRYNGLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCKLCRFGSASPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLDRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSFDDDEDQCIRLLSFCKKHRQPSIEPSFADGRIARVVGPCSDYEPPPNPSGCARTEPYNYFGRRGRKEPEALAAASLKRSFVENQPYLVGGYCQHGSSNNIETSGRGVCAKFFCSQERLRTSLIDTSNNILSTAEKYKYMRETFRKRLAFGKSRIHGFGIFAKHPHKGGDMVIEYTGELVRPTIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLPCYCGFPKCRGIVNDTEAEERAAKLYAPRSDLTDWRGE* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0080 1073 Pfam PWWP domain 287 374 IPR000313 -
Lan2g0080 1073 SMART set_7 909 1033 IPR001214 GO:0005515
Lan2g0080 1073 ProSiteProfiles Extended PHD (ePHD) domain profile. 659 783 IPR034732 -
Lan2g0080 1073 CDD PHD_ATX1_2_like 606 652 IPR042010 -
Lan2g0080 1073 ProSiteProfiles Post-SET domain profile. 1033 1049 IPR003616 -
Lan2g0080 1073 SUPERFAMILY Tudor/PWWP/MBT 280 386 - -
Lan2g0080 1073 Pfam PHD-zinc-finger like domain 661 782 - -
Lan2g0080 1073 ProSiteProfiles PWWP domain profile. 286 349 IPR000313 -
Lan2g0080 1073 CDD ePHD_ATX1_2_like 662 782 IPR041956 -
Lan2g0080 1073 Gene3D - 428 565 - -
Lan2g0080 1073 ProSiteProfiles FYR domain FYRC motif profile. 490 577 IPR003889 GO:0005634
Lan2g0080 1073 Gene3D SET domain 855 1063 IPR046341 -
Lan2g0080 1073 Pfam F/Y-rich N-terminus 433 483 IPR003888 GO:0005634
Lan2g0080 1073 Gene3D - 184 237 - -
Lan2g0080 1073 SMART fyrn_3 442 486 IPR003888 GO:0005634
Lan2g0080 1073 SMART PWWP_4 284 347 IPR000313 -
Lan2g0080 1073 SMART PHD_3 606 653 IPR001965 -
Lan2g0080 1073 SMART PHD_3 717 783 IPR001965 -
Lan2g0080 1073 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 5 1070 - -
Lan2g0080 1073 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 656 IPR013083 -
Lan2g0080 1073 Pfam PHD-finger 619 653 - -
Lan2g0080 1073 Pfam F/Y rich C-terminus 492 562 IPR003889 GO:0005634
Lan2g0080 1073 Pfam SET domain 920 1026 IPR001214 GO:0005515
Lan2g0080 1073 SMART PostSET_3 1033 1049 IPR003616 -
Lan2g0080 1073 ProSitePatterns Zinc finger PHD-type signature. 607 652 IPR019786 -
Lan2g0080 1073 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 785 IPR013083 -
Lan2g0080 1073 ProSiteProfiles Zinc finger PHD-type profile. 604 655 IPR019787 -
Lan2g0080 1073 SUPERFAMILY SET domain 906 1046 IPR046341 -
Lan2g0080 1073 ProSiteProfiles FYR domain FYRN motif profile. 427 486 IPR003888 GO:0005634
Lan2g0080 1073 SUPERFAMILY FYVE/PHD zinc finger 598 670 IPR011011 -
Lan2g0080 1073 CDD SET_SETD1-like 897 1045 - -
Lan2g0080 1073 Gene3D - 274 381 - -
Lan2g0080 1073 SUPERFAMILY Tudor/PWWP/MBT 189 232 - -
Lan2g0080 1073 ProSiteProfiles SET domain profile. 909 1027 IPR001214 GO:0005515
Lan2g0080 1073 PANTHER PHD FINGER PROTEINS 5 1070 - -
Lan2g0080 1073 SMART fyrc_3 494 574 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0080 Lan-Chr2 723613 737440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0080 607 753 C2H2 Transcription Factor Family AT3G14740 39.735 6.35e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan2g0080 zf-HC5HC2H_2 3.7e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0080 - - lang:109356942 1841.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0071 9 513782 540093 Lan2g0080 2 723613 737440 LSH