Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0053 ATGGCTTTGCAAAACATTGGTGCTAGTAACAGTGATGATGCCTTCTATAGGTATAAGATGCCTCGAATGATAACGAAAATTGAGGGTAGAGGTAATGGCATTAAAACAAATATTGTCAATATGGTTGACATTTCAAAAGCCTTGGCCAGGCCAGCCGCTTACACAACCAAGTATTTCGGTTGTGAACTTGGAGCCCAATCAAAATTTGATGAGAAAACTGGGACTTCTCATGTTAATGGAGCACATGAAACTGCAAAACTGGCAGGCCTTCTTGAGAACTTCATCAAGAAATATGTCCAGTGTTATGGCTGTGGGAATCCTGAAACTGAGATCCTCATTACCAAGAGTCAAATGATCCAGCTGAAGTGCGCCGCTTGTGGCTTTCTTTCCGATGTTGATATGAGAGACAAGCTGACTACCTTTATCATCAAGAATCCTCCTGAAGCAAAGAAAGGAACCAAGGACAAGAAGGCCATGAGGAGAGCTGAGAAAGAGAGATTGAAGGAAGGTGAAGCAGCCGACGAGGAACTGAAAAAGCTGAAGAAAGAGGTGAAGAAGAAAGTCTCTTCATCTTCAAAGAATGGAACTGTGAAATCTACCTCTTCAAAGAAGAAAGGAAGTGGCTCTGATGAAGACCATGTGTCGCCTACTCACAGTCCAATTAATGAGAAAGAGGCAGCTAGTGATGAAGATGATGATGATGATGTACAATGGCAGACAGATACATCGATAGATGCTGCTCGTCAACGTATCCAAGAACAGCTAAGTGCTGCGACAGCTGATATGGTCATGCTCTCCACAACTGAACCCGAGAAGAAGAAGAAATCAGCTAGTAAGGCAAGTGGTGATTCTAATGGTAACTCAATGGACCATGGCAAACTGGTTGGGGAAGTGAAAGCAAGCTTGAAGAAAGGCATTGGTGCAAAAGAATTGCAGTCCTATCTGGCATCACTTCCTGGATCTGCTCAAGAAAAGATGAGTGCTCTTTATGAAGCCATACTCAACGGCACGGAGAAAGGGTTTGCTAAAGAAGCCATCAAGAAGAGGAGTTACCTTGCAGCTGCAGTTGCAGAGGAGGGTTCGCAGTCGTTGTTGCTGCATGCAATTGAGGAATTTTCCGGAAAGTCCAGTTCCAATGCATTGAAGGAGGTTGCACTGGTTTTGAAGGCACTCTATGATGGTGATGTGTTGGAGGAGGAGCACATAGTGCAGTGGTTTCAAAGAGGGCTGAAAGGTGATAACAAGGGCTCTCAGATTTGGAAGAATGTTCAACCCTTCATTGATTGGCTTCAGACTGCTGAATCAGAATCAGAGGAAGAATAA 1323 0.4392 MALQNIGASNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDISKALARPAAYTTKYFGCELGAQSKFDEKTGTSHVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEILITKSQMIQLKCAACGFLSDVDMRDKLTTFIIKNPPEAKKGTKDKKAMRRAEKERLKEGEAADEELKKLKKEVKKKVSSSSKNGTVKSTSSKKKGSGSDEDHVSPTHSPINEKEAASDEDDDDDVQWQTDTSIDAARQRIQEQLSAATADMVMLSTTEPEKKKKSASKASGDSNGNSMDHGKLVGEVKASLKKGIGAKELQSYLASLPGSAQEKMSALYEAILNGTEKGFAKEAIKKRSYLAAAVAEEGSQSLLLHAIEEFSGKSSSNALKEVALVLKALYDGDVLEEEHIVQWFQRGLKGDNKGSQIWKNVQPFIDWLQTAESESEEE* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0053 440 MobiDBLite consensus disorder prediction 147 236 - -
Lan2g0053 440 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 440 IPR045196 GO:0003743|GO:0006413
Lan2g0053 440 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Lan2g0053 440 Gene3D - 292 440 - -
Lan2g0053 440 MobiDBLite consensus disorder prediction 148 189 - -
Lan2g0053 440 Gene3D - 2 104 - -
Lan2g0053 440 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Lan2g0053 440 Pfam eIF4-gamma/eIF5/eIF2-epsilon 362 440 IPR003307 GO:0005515
Lan2g0053 440 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Lan2g0053 440 SMART 542_3 349 436 IPR003307 GO:0005515
Lan2g0053 440 CDD W2_eIF5 290 438 - -
Lan2g0053 440 ProSiteProfiles W2 domain profile. 275 440 IPR003307 GO:0005515
Lan2g0053 440 Coils Coil 167 187 - -
Lan2g0053 440 SUPERFAMILY ARM repeat 294 434 IPR016024 -
Lan2g0053 440 Gene3D - 105 145 - -
Lan2g0053 440 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 1 440 - -
Lan2g0053 440 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Lan2g0053 440 MobiDBLite consensus disorder prediction 204 225 - -
Lan2g0053 440 MobiDBLite consensus disorder prediction 267 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0053 Lan-Chr2 489571 492466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0053 1 433 Eukaryotic Initiation Factors Gene Family AT1G36730 62.162 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0053 K03262 - gmx:100778073 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0040 9 248390 251343 Lan2g0053 2 489571 492466 LSH
Lan2g0053 2 489571 492466 Lan8g0031 8 259093 261069 LSH