Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0052 ATGGCATTGCAGAACATTGGTGCTGGGAATAGTGATGATGCCTTCTACAGGTATAAGATGCCTAGAATGATTACCAAAATTGAGGGTAGAGGTAATGGCATAAAAACAAATGTTGTCAACATGGTTGATATTGCAAAGGCATTGGCAAGGCCACCATCTTACACAACAAAGTATTTTGGCTGTGAACTTGGAGCACAGTCAAAATTTGACGAGAAAACTGGGACTTCTCATGTTAATGGAGCACATGAAACTGCAAAACTTGCAGGTCTTCTTGAGAATTTCATCAAGAAGTATGTCCAGTGTTATGGTTGTGGGAATCCTGAAACTGAGATCTTGATTACAAAGACTCAAATGCTCCAGCTGAAATGTGCTGCTTGTGGTTTCGTGTCCGATGTGGATATGAGAGACAAGCTGACTACCTTTATCATCAAGAACCCTCCTGTAGTGAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGGGCTGAGAAGGAGAGACTGAAGGAAGGTGAAGCAGCTGATGAGGAACTGAAAAAGGTGAAGAAAGAGGTGAAGAAGAAAGTTCCTTCTTCGAAGACTGGAACTATAAAGTCTACCTCTTCAAAGAAGAAAGGAAGTGGCTCTGATGAAGAACATACATCACCTCCTTCTAGTCAAGTTGAAGAAAAAGAGGTTTCTAATGATGAAGAGGAAGAAGATGATGATGATGATGTCCAATGGCTAACTGATACATCACTTCTTGCTGCTCGCCAACGTATTCAAGAACAGCTTAGTTCTGTGACAGCTGATATGGTCATGCTCTCTACCGAAGAACCCGAGAAGAAGAAAAAACCAGCTAGTAAAGGAAGTGATGGTTCTGAGAATGGTGATGCGAAGGATAAACTGGCCCGGGAAGTGAAAGCAAGTTTGAAGAAAGGAGTTGGTGCAAAAGAGTTGCAGTCCCATCTTGCAGCACTTCCTGGATCTCCTCAAGAAAAGATGAGTGTTTTGTTTGAGGCCCTTTTCGAGGGAGTTGAGAAAGGTTTTGCAAAAGAAGCAATTAAGAAGAAGAGCTACGTTGCTGTTGCTGTTTCCGGGGAAGAGGGATTGCAGTTGTTATTGCTTCATGCTATTGAGGAATTTTCTTGCAAGTCTACTTCCAATGCATTGAAAGAGGTTGCACTGCTTCTGAAAACTCTCTATGATGCTGATGTGTTGGAGGAAGAGCCCATAGTGCAGTGGTATTCAAAAGGACTGAAGGGTGATAAAAAGGACTCTCAGCTTTGGAAGAATGTTAAACCTTTTATTGATTGGCTTCAGAGTGCTGAATCAGAATCAGAGGAAGAGTAA 1329 0.4214 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGCELGAQSKFDEKTGTSHVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEILITKTQMLQLKCAACGFVSDVDMRDKLTTFIIKNPPVVKKGSKDKKAMRRAEKERLKEGEAADEELKKVKKEVKKKVPSSKTGTIKSTSSKKKGSGSDEEHTSPPSSQVEEKEVSNDEEEEDDDDDVQWLTDTSLLAARQRIQEQLSSVTADMVMLSTEEPEKKKKPASKGSDGSENGDAKDKLAREVKASLKKGVGAKELQSHLAALPGSPQEKMSVLFEALFEGVEKGFAKEAIKKKSYVAVAVSGEEGLQLLLLHAIEEFSCKSTSNALKEVALLLKTLYDADVLEEEPIVQWYSKGLKGDKKDSQLWKNVKPFIDWLQSAESESEEE* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0052 442 MobiDBLite consensus disorder prediction 203 218 - -
Lan2g0052 442 MobiDBLite consensus disorder prediction 149 190 - -
Lan2g0052 442 SMART 542_3 350 438 IPR003307 GO:0005515
Lan2g0052 442 CDD W2_eIF5 293 435 - -
Lan2g0052 442 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Lan2g0052 442 MobiDBLite consensus disorder prediction 224 239 - -
Lan2g0052 442 SUPERFAMILY ARM repeat 290 436 IPR016024 -
Lan2g0052 442 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Lan2g0052 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 1 442 - -
Lan2g0052 442 Gene3D - 105 145 - -
Lan2g0052 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 442 IPR045196 GO:0003743|GO:0006413
Lan2g0052 442 Pfam eIF4-gamma/eIF5/eIF2-epsilon 364 442 IPR003307 GO:0005515
Lan2g0052 442 Gene3D - 3 104 - -
Lan2g0052 442 Gene3D - 288 442 - -
Lan2g0052 442 MobiDBLite consensus disorder prediction 268 294 - -
Lan2g0052 442 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Lan2g0052 442 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Lan2g0052 442 MobiDBLite consensus disorder prediction 149 239 - -
Lan2g0052 442 ProSiteProfiles W2 domain profile. 285 442 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0052 Lan-Chr2 486313 488230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0052 1 435 Eukaryotic Initiation Factors Gene Family AT1G36730 63.453 3.76e-178 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0052 K03262 - gmx:100777906 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0039 9 242629 244424 Lan2g0052 2 486313 488230 LSH