Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1506 ATGGAGGGTGGGGACTGCTGCAGGTGCCAGTACAGTCATAGTCATCATGTTGTTGTAACAAGTAAAGATAACAGGCTTACAACTAAGGAAGTAAGTGAGAGGATGTCAAGTAGCAGGAACACTCATTGGTGTTACAGTTGCAGGAAACCGGTTCGATTGGGACGCCAACAAATGGTTTGTCATAGCTGTGGTGACGGATTTGTTCAGGAGCTTAATGATATGGTGCCTGTAAACTCTCTACACTTATTTGGCCTCGACAATAATGAAGGACGTGACCAAAGGTTTGGACTTATGGAAACTTTCTCAGCATTTATGAGGCAACGAATGGCAGATAGAAGCCATGCCCATGATATCAGGGCTCGATCAGATTTAATTCCTGAACATAGGCCTGGCTTCGCTCCTTTGTTGATCTTCGGTGGACAAATTCCTTTTGGATTGTCTGGACATGGCGGCATTGAAGCTCTTTTTAATGGGACTCCAGGAATTGGTGTCACACGAGGTAACACAGGTGATTTGTTTATTGGTCCTGGACTGGAAGAACTGTTTGAACAGATTTCAGCTAATAACCAGCAAGGCCCCCCACCGGCAACAAGGACTTCTATAGATGCAATGCCTACTATCAAGATCACGCAGAGGCATCTTCGCTCAGATTCACATTGTCCGGTATGCAAAGATAAATTTGAGCTGGGATCTGAAGCTAGACAAATGCCATGCAACCACGTGTATCATTCTGACTGTATCGTTCCATGGTTAGTCCAGCATAACACCTGCCCTGTTTGCCGCCAAGAATTGCCACCGCAAGGATTGAGTAGTAACCGTAGCTCAAATGGTCGAAGTAGAACTAATATTAGTAGCAGCGCCAACGGAAGGGTAAGTAGCAGCAGGGAGAACCGGGGAAGGCGAAATCCGTTATCTTTTTTGTGGCCATTCCGCTCTTCAAGTTCTAGCAGTAATGGAGCCACTGGAAGCAGCTCACCAGCACCAACTATCCCTGAGAATAGCCATCTTTCAGGGTATTCTGGATGGCCATTTGAATGA 1038 0.4605 MEGGDCCRCQYSHSHHVVVTSKDNRLTTKEVSERMSSSRNTHWCYSCRKPVRLGRQQMVCHSCGDGFVQELNDMVPVNSLHLFGLDNNEGRDQRFGLMETFSAFMRQRMADRSHAHDIRARSDLIPEHRPGFAPLLIFGGQIPFGLSGHGGIEALFNGTPGIGVTRGNTGDLFIGPGLEELFEQISANNQQGPPPATRTSIDAMPTIKITQRHLRSDSHCPVCKDKFELGSEARQMPCNHVYHSDCIVPWLVQHNTCPVCRQELPPQGLSSNRSSNGRSRTNISSSANGRVSSSRENRGRRNPLSFLWPFRSSSSSSNGATGSSSPAPTIPENSHLSGYSGWPFE* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1506 345 Pfam Ring finger domain 219 261 IPR001841 -
Lan20g1506 345 MobiDBLite consensus disorder prediction 267 293 - -
Lan20g1506 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 36 340 - -
Lan20g1506 345 SUPERFAMILY RING/U-box 200 267 - -
Lan20g1506 345 ProSiteProfiles Zinc finger RING-type profile. 220 261 IPR001841 -
Lan20g1506 345 Pfam zinc-ribbon 40 71 IPR039525 GO:0061630
Lan20g1506 345 CDD RING-H2_RNF126_like 220 261 - -
Lan20g1506 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 267 IPR013083 -
Lan20g1506 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 36 340 - -
Lan20g1506 345 SMART ring_2 220 260 IPR001841 -
Lan20g1506 345 MobiDBLite consensus disorder prediction 267 345 - -
Lan20g1506 345 MobiDBLite consensus disorder prediction 307 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1506 Lan-Chr20 21895539 21897179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1506 166 311 C3H Transcription Factor Family AT1G68180 37.671 4.81e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1506 K11982 - gmx:100787523 491.115