Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1500 ATGAATCTTGGGTCACTGGATCAGTGGAGAAATTACTTTAGAACTGCAAATTCTGATATATTTGATATCATTAATCATGCAATTATGGTGGCTGCTTCTGATTGCCCCAAAGAGTTCAGGTTGAGGAGGGATGAGATTGCACAAAAGTTGTTCTCTTGCAGATTCACTCACTGTATGGGTTGTGACAAAATTGAGCTTTCTGTGTCTGTTGATGATAACGAAAAAGGCGATGGTGGTTGCAAGAATTGTTTTGATAGAGATGATGGTGCTGAGTTTGAATATGAAGCAGGAGCAAGTAAGGAGAGCAAGGTCAACAGTAGTGGAAATGATCATGGAGAGATGAACATGAATCAAGTTAGTAATTATAGCTTTGAGGAAGCTGAGGCATTGACTAATGAGATTGAAGAAGAGTCCCAGTATCATGAGGAGGTGTTGAGGATCAAGGAAGTTATGCTTAACTTTGAAGAAGAGTCTGATAAAGTGTTATTTGAGTCATTGAGGAGGCTCCAGCTGATGGAACTCACTGTGGATCTTCTCAAGGTCACTGAGATTGGGAAGGCTGTTAATCCTCTCCGAAAGCATGGATCAAGGGATATTCGTCAACTTACACGGACACTTATTGATGGCTGGAAAGAAATGGTGGATGAATGGGTCAAGGCTACCACACCTATTGCAGGTTCAGAAGGAACTCCAGATTCAATAAATCCATCTGTTATTGATGAAGAAGAAGGGCTTCCATCACCTCCAATGGATGAAGCTTTCTTTGCAGCTCAAACTGGTTCTATGGAACTCTCTCAGTTCTTTGATGGCATGGATGATGATTTAAATCCTCAACAAAGTCGAGAATTCATCAAGAACCGTGATAATGGTAGGAGACCATCTTTGGACAGTCAAAATATGGCAAAGAGGAAGCATCAGGCTTCCAATAAGGCAAACATCATTGGGAAGGATAGTAAGAATCAGCAAACAAAGAAAAATGGAACTTTTGTGCGGCTAAATAAACCAGTAGATGCTGATTCTGGTCCTGGCAGACCACCAAAATCATCCGTGCAGAAAAAAAGCAATATCGAGCCTAAAATGCAGCCAAAAATAGTAAAAACGGCTGTCCAAAAAAGACATCAAATTCAGCAAGATAAGTTCAAGTGTTCGGATGATGCCGCAGTCCAAGTGAAGCTAGAAGCCACCAAAAGGAAACTTCAGGAGCGGTATCAACAAGCTGAAAATGCTAAGAGGCAGCGAACAGTGCAGGTTATGGAATTACATGACCTCCCCAAGAAAGCCGTTTGCCACCGAAATCCACATGTCAAACCAGGAAATCAGAAGAGGCAATGGGCTCATGGAAGAAGATAG 1350 0.417 MNLGSLDQWRNYFRTANSDIFDIINHAIMVAASDCPKEFRLRRDEIAQKLFSCRFTHCMGCDKIELSVSVDDNEKGDGGCKNCFDRDDGAEFEYEAGASKESKVNSSGNDHGEMNMNQVSNYSFEEAEALTNEIEEESQYHEEVLRIKEVMLNFEEESDKVLFESLRRLQLMELTVDLLKVTEIGKAVNPLRKHGSRDIRQLTRTLIDGWKEMVDEWVKATTPIAGSEGTPDSINPSVIDEEEGLPSPPMDEAFFAAQTGSMELSQFFDGMDDDLNPQQSREFIKNRDNGRRPSLDSQNMAKRKHQASNKANIIGKDSKNQQTKKNGTFVRLNKPVDADSGPGRPPKSSVQKKSNIEPKMQPKIVKTAVQKRHQIQQDKFKCSDDAAVQVKLEATKRKLQERYQQAENAKRQRTVQVMELHDLPKKAVCHRNPHVKPGNQKRQWAHGRR* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1500 449 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 5 448 - -
Lan20g1500 449 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 132 225 IPR035441 -
Lan20g1500 449 MobiDBLite consensus disorder prediction 223 245 - -
Lan20g1500 449 MobiDBLite consensus disorder prediction 429 449 - -
Lan20g1500 449 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
Lan20g1500 449 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 140 228 IPR035441 -
Lan20g1500 449 Pfam TFIIS helical bundle-like domain 166 214 IPR017923 -
Lan20g1500 449 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 5 448 IPR044805 -
Lan20g1500 449 MobiDBLite consensus disorder prediction 430 449 - -
Lan20g1500 449 Coils Coil 389 416 - -
Lan20g1500 449 CDD TFIIS_I 142 215 - -
Lan20g1500 449 MobiDBLite consensus disorder prediction 293 329 - -
Lan20g1500 449 MobiDBLite consensus disorder prediction 282 361 - -
Lan20g1500 449 SMART TFS2_5 144 216 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1500 Lan-Chr20 21860041 21863464 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lan20g1500 Med26 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1500 - - gmx:100775579 684.1