Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1488 ATGATCAACCTCAACCACAATATGATGAAATCATTCACATCTTCATCTTCCTCTAAGGTCACCAAGAAGAAGCAAACAACCTCAACAAGAAGTGGAACATCCTCATCAACATCACAAGAGAAGCCACCACCACAACAACAACAACAACAACAACATGAGACTACATGGGGAGGGAGGTACCTTGGTGTGAGGAGGAGGCCATGGGGAAGATACGCCGCGGAAATTCGAGACCCTTCCACTAAGGAAAGGCATTGGTTAGGCACGTTTGATACAGCAGAAGAAGCTGCCCTAGCTTATGATAGGGCAGCTCGCTCCATGCGTGGATCACGTGCCCGAACCAACTTCGTCTACCCAGACACCCCGCCCGGTTCATCAGTCACTTCTATTATCTCTCCAGATGAACAAACTCAAAACTATCACCATCAAGCCCAAGAATTTTCTCCTATCTTTGACCCGACCCATATTACCCAACAACCCGACCCTCATACCCACTTCTCTCTATCCGGGTTTCCGGGTATGACAGATACTACCATGTTGTATGGTTATAGTGAACAAAGTCTGGGATCCACCACAATTGAGAGCTCAAATTTTGAACAACTTTTTCATGATGATGAAACCCAACTTCCACCATTGCCACCTGATATTACAAGTTCAGTGGGCTATGATATGGGCCATGGGTTTTACAATGATGAGGTTGGGCTTTCTGACCCGGGCTTGAATGCTTGTGCAGGTGGGTCAAGTTACCCATATTTGGGCTTTGAGTCAGGTGAATATGTGCATAGCCCACTTTTCAGTTCAATGCCACCAGTTCGAGACCCAGAAGGTTTTGATTTGGGAAACTCTTCTTATTTCTTCTAA 858 0.4592 MINLNHNMMKSFTSSSSSKVTKKKQTTSTRSGTSSSTSQEKPPPQQQQQQQHETTWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGSSVTSIISPDEQTQNYHHQAQEFSPIFDPTHITQQPDPHTHFSLSGFPGMTDTTMLYGYSEQSLGSTTIESSNFEQLFHDDETQLPPLPPDITSSVGYDMGHGFYNDEVGLSDPGLNACAGGSSYPYLGFESGEYVHSPLFSSMPPVRDPEGFDLGNSSYFF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1488 285 MobiDBLite consensus disorder prediction 1 56 - -
Lan20g1488 285 Gene3D AP2/ERF domain 58 117 IPR036955 GO:0003700|GO:0006355
Lan20g1488 285 SUPERFAMILY DNA-binding domain 59 116 IPR016177 GO:0003677
Lan20g1488 285 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Lan20g1488 285 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Lan20g1488 285 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Lan20g1488 285 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 285 - -
Lan20g1488 285 CDD AP2 59 115 IPR001471 GO:0003700|GO:0006355
Lan20g1488 285 Pfam AP2 domain 60 108 IPR001471 GO:0003700|GO:0006355
Lan20g1488 285 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 10 285 - -
Lan20g1488 285 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Lan20g1488 285 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1488 Lan-Chr20 21594581 21595575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1488 47 277 AP2-EREBP Transcription Factor Family AT5G13910 45.763 1.43e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan20g1488 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1488 K09286 - gmx:100815668 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1034 8 12376333 12377109 Lan20g1488 20 21594581 21595575 LSH