Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1477 ATGAATGATCTTTTGACAAAATCTTTCACCAGCTACATTGATCTAAAGAAAGCAGCACTGAAAGATGAAGTGGATTTGGAAGCTGGTATTCCTCACAACAATGTAGAACTAACCTCTTCTTCCTCCGTAAAACTCGAACTCGATACCGATATGGGTCTCTTCCTTGAAGAAGCAGAGAAAGTGAAAGAAGAAATGAACACCCTTCGTGACATACTAGAAAAGCTTAAACTTGCAAATGAAGAAAGCAAGTCACTTCACAAACCAGAAGCATTGAAATCCTTAAGGAACATCATCAATGCTGATATAATCACAGTGTTGAAAAAATCAAGACTTATTAGGACCCAATTGGAAGAAATTGACAATGCCAACGCCGCGAATCGAAGACTCTCAGGGCTTAAAGATGGGTCCCCTGCGATTTACAGAACACGAATCGCGGTCACGAGCGGGTTAAGGAAGAAGCTGAAAGAGGTAATGATGGAATTTCAAGGACTTAGGCAGAAGATTATGACAGAGTACAAGGATACAGTAGGGAGAAGGTACTATAATGTGACTGGTGAGTACCCAGATGAGGAAGTTATTGAGAAGATTATATCGAACGGCGAAGCCGAGTTTTTAGGGAAGACTATTGAGGAGCATGGAAGAGGTAAAGTTCTTGAAACTGTGGTGGAGATTCAGGATAGGTATGATACTGCTAAGGAAATTGAGAAGAGTTTGTTGGAGCTGCATCAAGTTTTTTTGGATATGGCTGTTATGGTTGAGGCTCAGGGTGAGAAAATGGATGATATTGAACATCATGTGATTCATTCTTCACATTATGTGAAGGATGGGACTAAGGATCTTGAGAGTGCTAAGAAGTTGCAGAGAGGGAGTAGGAAATGGATGTGTATTGGGATTATACTTTTGCTAATTCTCATTCTTGTTATTGTTATTCCTATTGTCACGAGTTTCGGCAGTTCTTGA 960 0.4021 MNDLLTKSFTSYIDLKKAALKDEVDLEAGIPHNNVELTSSSSVKLELDTDMGLFLEEAEKVKEEMNTLRDILEKLKLANEESKSLHKPEALKSLRNIINADIITVLKKSRLIRTQLEEIDNANAANRRLSGLKDGSPAIYRTRIAVTSGLRKKLKEVMMEFQGLRQKIMTEYKDTVGRRYYNVTGEYPDEEVIEKIISNGEAEFLGKTIEEHGRGKVLETVVEIQDRYDTAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVIHSSHYVKDGTKDLESAKKLQRGSRKWMCIGIILLLILILVIVIPIVTSFGSS* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1477 319 PANTHER SYNTAXIN 5 312 IPR045242 -
Lan20g1477 319 SUPERFAMILY t-snare proteins 49 276 IPR010989 GO:0016020|GO:0016192
Lan20g1477 319 CDD SNARE_syntaxin1-like 220 281 - -
Lan20g1477 319 SMART SynN_4 46 173 IPR006011 GO:0016020
Lan20g1477 319 CDD SynN 51 205 IPR006011 GO:0016020
Lan20g1477 319 Pfam SNARE domain 258 309 IPR000727 -
Lan20g1477 319 Gene3D - 51 179 - -
Lan20g1477 319 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 312 - -
Lan20g1477 319 ProSitePatterns Syntaxin / epimorphin family signature. 227 267 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lan20g1477 319 Gene3D - 217 317 - -
Lan20g1477 319 Coils Coil 55 81 - -
Lan20g1477 319 Pfam Syntaxin 54 256 IPR006011 GO:0016020
Lan20g1477 319 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 221 283 IPR000727 -
Lan20g1477 319 SMART tSNARE_6 216 283 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1477 Lan-Chr20 21500821 21501930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1477 1 319 SNARE and Associated Proteins AT1G08560 62.305 1.28e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1477 K08486 - gmx:100816016 476.478