Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1466 ATGGAAATTCAATTCCAACAACCAAAGCAGCATTTGAAGCAGAGCATGTTAATCAAAAAAAGAGGAAAATACAAAGGAAGAAATAACACAAACAAGTTAATTGGTGTGAGACAAAGGCCTTCAGGAAAATGGGTAGCAGAGATTAAAGATACAATTCAAAAGATAAGAATGTGGCTTGGCACTTTTGACACTGCAGAGGAAGCAGCCAGAGCTTACGACGAAGCCGCGTGCCTTCTTCGTGGATCAAATGCTCGCACCAATTTCATCACTCATGTCTCATCGGACTCTCCCCTCGCTTTTCGGATTCGAAATCTCCTTAACAACAGAAAAGGTAACAAAGAACATGCAAATGCTACTAGCAGTGATGCTAGTAATAGCACTAGTACTAGTACTAGTACTAATTCATCAAATTATGATAAGAGTAACAACTCACTTTCTAATGTGACAACAACCCAAAATACACAACTATATGATGATGCATATAGACCAGATTTGAGTAACTTCAAGGAAGAGTTTGAGTCATGTTTTCAGCAAAATCATTCAGAGAATTTTGGATATGTTTTTGAGGGTTTTCCTTTTGCTCAAGTATTGGAAATACCAAAGATTGATGGCATGCAAGATACAAATATAAGCTTGGAGATTTCAGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTTTATGCAATGAATGGTGTAAAAGAGTACATGCAAACTGTTCAGGACTCTAATGAAACTCTTTGGGATCTTCCACCCTTATGCTCCTTTTTATTCTGA 786 0.369 MEIQFQQPKQHLKQSMLIKKRGKYKGRNNTNKLIGVRQRPSGKWVAEIKDTIQKIRMWLGTFDTAEEAARAYDEAACLLRGSNARTNFITHVSSDSPLAFRIRNLLNNRKGNKEHANATSSDASNSTSTSTSTNSSNYDKSNNSLSNVTTTQNTQLYDDAYRPDLSNFKEEFESCFQQNHSENFGYVFEGFPFAQVLEIPKIDGMQDTNISLEISEFERMKVERQISASLYAMNGVKEYMQTVQDSNETLWDLPPLCSFLF* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1466 261 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Lan20g1466 261 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Lan20g1466 261 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Lan20g1466 261 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Lan20g1466 261 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Lan20g1466 261 MobiDBLite consensus disorder prediction 111 151 - -
Lan20g1466 261 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 248 - -
Lan20g1466 261 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Lan20g1466 261 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Lan20g1466 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 13 248 - -
Lan20g1466 261 CDD AP2 35 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1466 Lan-Chr20 21373277 21376244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1466 19 256 AP2-EREBP Transcription Factor Family AT5G19790 43.725 6.54e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan20g1466 AP2 8.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1466 K09286 - gmx:100796898 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0750 10 9711647 9712552 Lan20g1466 20 21373277 21376244 PCT
Lan20g1466 20 21373277 21376244 Lan10g0750 10 9711647 9712552 PCT