LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan20g1464	ATGGCCAAAGTTCCAATATTTTTGGTGTGGCTTATGCTCTTACAATGTTATGTAGCCATGGCAGATGCGAAGTACGCGAAATATAAAGATCCGAAAGAGTCGTTGGATTCTCGAATCGATGATCTTATCGAGAGGATGACTTTGGAAGAGAAAATTGGTCAAATGGTGCAAATTGAGCGCAGTGTTGCTTCTGCAGATGTGATTAATAAGTACTTTATTGGGAGTGTGCTAAGTGGTGGAGGTAGTGTTCCGAAGAAACAAGCCTCTGCTGAGGATTGGGTTGACATGGTGAATGATTTTCAACGCGGCGCGTTATCTACTAGGCTCGGGATTCCAATGATTTATGGGATTGATGCTGTTCATGGGCATAACAATGTCTATAATGCAACAATTTTTCCTCACAATATCGGCCTTGGCGCGACTAGGGATCCTAAACTTATGAAGAAGATTGGTGAAGCAACTGCTCTTGAAGTTAGAGCAACTGGGATTCAGTATGCCTTTTCGCCTTGTATTGCGGTCTGTAGAGATCCGAGGTGGGGCCGATGTTACGAAAGTTACAGTGAAGATCATAAAATAGTTCAAGCTATGACTGAGATAATTCCAGGACTGCAAGGTGATATCCCTGCAAACTCGCCGAAGGATGTTCCATTTGTTGCTGGAAAAACGAAAGTCGCAGCTTGCGCTAAGCACTTCGTTGGTGATGGTGGAACAACAAAAGGAATCAATGAGAACAACACAGTGATAAACAAAGAGGGATTGCTTAGCATTCATGTTCCAGCCTACTATGACTCTATCAGTAAGGGTGTGGCAACCATCATGGTCTCTTATTCAAGCTGGAATGGAAAAAAGATGCATGCTAATCATGATCTACTCACCGGCTTTCTCAAGAACACGCTCCGTTTTCGGGGTTTTGTCATATCAGATTGGGAGGGAATTGACAGAATTACTTCCCCTCCGCATTCTAACTACACATATTCCATTGAAGCTGGAGTTAATGCTGGAATTGACATGGTAATGGTTCCCCATAACTACACAGAATTCATTGATGGCCTAACCTTACTGGTGAAAAACAATGTCATACCCATTAGTCGAATCGACGATGCGGTGGAGAGAATTTTGAGGGTCAAGTTTGTGATGGGTCTTTTTGAGTATCCATTGGCAGATTACAGCCTAGTAAATGAAATAGGAAAACAGGAACATAGAGAATTAGCTAAGAAAGCTGTGAGGAAATCATTGGTCTTGTTAAAGAATGGTAAAGATGCTGATCAACCATTGCTCCCTCTTCCGAAATCGGCGAAAAGAATACTTGTTGCTGGAAGCCATGCTGATAATCTAGGCTATCAGTGTGGTGGCTGGACCATTGAATGGCAAGGAGTTAGTGGCAACAACATCACTAGTGGTACAACAATCCTTAGTGCAATCAAAAACACTGTTGACAGAGATACAGAGATAGTGTACAAGGAGAATCCGGATTTAGACTATGTCAAGTCTAATGATTTTTCATATGCCATTGTTGTAGTTGGAGAGCACCCTTATGCAGAAACAAATGGTGATAGCTTAAATTTAACGATTTCCGATCCCGGGCCGAGCACCATAAGTAATGTTTGTGGAGGTGTCAAATGTGTTGTCGTGCTCATATCCGGCCGCCCCGTTGTCATACAACCATATCTTGACAAAATTGAAGGCCTTGTTGCAGCTTGGCTTCCAGGCACTGAGGGACAAGGTGTGGCTGATGTCTTATTTGGTGAGTATGGTTTCACTGGAAAGCTTTCAAGGACATGGTTTAAGAATGTTGATCAGTTACCAATGAATGTTGGAGATTCTCATTATGATCCACTCTTTCCATTTGGATTTGGTCTTACAACAAAACCACATAAGGCCATATAG	1887	0.424	MAKVPIFLVWLMLLQCYVAMADAKYAKYKDPKESLDSRIDDLIERMTLEEKIGQMVQIERSVASADVINKYFIGSVLSGGGSVPKKQASAEDWVDMVNDFQRGALSTRLGIPMIYGIDAVHGHNNVYNATIFPHNIGLGATRDPKLMKKIGEATALEVRATGIQYAFSPCIAVCRDPRWGRCYESYSEDHKIVQAMTEIIPGLQGDIPANSPKDVPFVAGKTKVAACAKHFVGDGGTTKGINENNTVINKEGLLSIHVPAYYDSISKGVATIMVSYSSWNGKKMHANHDLLTGFLKNTLRFRGFVISDWEGIDRITSPPHSNYTYSIEAGVNAGIDMVMVPHNYTEFIDGLTLLVKNNVIPISRIDDAVERILRVKFVMGLFEYPLADYSLVNEIGKQEHRELAKKAVRKSLVLLKNGKDADQPLLPLPKSAKRILVAGSHADNLGYQCGGWTIEWQGVSGNNITSGTTILSAIKNTVDRDTEIVYKENPDLDYVKSNDFSYAIVVVGEHPYAETNGDSLNLTISDPGPSTISNVCGGVKCVVVLISGRPVVIQPYLDKIEGLVAAWLPGTEGQGVADVLFGEYGFTGKLSRTWFKNVDQLPMNVGDSHYDPLFPFGFGLTTKPHKAI*	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan20g1464	628	Gene3D	-	397	623	IPR036881	GO:0004553\|GO:0005975
	Lan20g1464	628	Gene3D	-	21	396	IPR036962	GO:0004553\|GO:0005975
	Lan20g1464	628	Pfam	Glycosyl hydrolase family 3 C-terminal domain	412	621	IPR002772	GO:0004553\|GO:0005975
	Lan20g1464	628	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	412	621	IPR036881	GO:0004553\|GO:0005975
	Lan20g1464	628	SUPERFAMILY	(Trans)glycosidases	25	411	IPR017853	-
	Lan20g1464	628	PANTHER	BETA-D-GLUCOSIDE GLUCOHYDROLASE	12	626	-	-
	Lan20g1464	628	PRINTS	Glycosyl hydrolase family 3 signature	108	124	IPR001764	GO:0004553\|GO:0005975
	Lan20g1464	628	PRINTS	Glycosyl hydrolase family 3 signature	132	151	IPR001764	GO:0004553\|GO:0005975
	Lan20g1464	628	PRINTS	Glycosyl hydrolase family 3 signature	178	194	IPR001764	GO:0004553\|GO:0005975
	Lan20g1464	628	PRINTS	Glycosyl hydrolase family 3 signature	224	240	IPR001764	GO:0004553\|GO:0005975
	Lan20g1464	628	PRINTS	Glycosyl hydrolase family 3 signature	294	312	IPR001764	GO:0004553\|GO:0005975
	Lan20g1464	628	Pfam	Glycosyl hydrolase family 3 N terminal domain	47	375	IPR001764	GO:0004553\|GO:0005975
	Lan20g1464	628	PANTHER	PERIPLASMIC BETA-GLUCOSIDASE-RELATED	12	626	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan20g1464	Lan-Chr20	21352918	21356203	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan20g1464	8	626	Glycoside Hydrolase	AT5G20950	73.667	0.0	941

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan20g1464	K05349		K01188	gmx:100819414	1083.94

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan5g0153	5	1901897	1902612	Lan20g1464	20	21352918	21356203	LSH
	Lan8g0942	8	11151697	11152509	Lan20g1464	20	21352918	21356203	LSH
	Lan20g1464	20	21352918	21356203	Lan8g0145	8	2432312	2433360	PCT
	Lan8g0145	8	2432312	2433360	Lan20g1464	20	21352918	21356203	PCT