Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan20g1458 | ATGGACAGGCTCATAAGTTTAGACCCATCAAACATAGTCCCAATAAGAATTGAACAAGGTCAAAAATGTTATGGCAGGGTCACCTTATGCAATGTAATGTATACAATGCCTGTGGCTTTTAGGCTTCAGCCACTGAATAAGGCACATTACAATGTTAAGCCACAATCTGGTATCATATCTCCTTTGGCCACAATCACTTTAGAAATAATCTATTATTTCTCATCTGGGTCTATTCTTCCTCACTCTTTTCCACATTCACAAGATTCTTTCCTTCTTCATAGTGTTATAGTTCCTGGTGCATTGATCAAAGGACCTTGTTCAATGTTTGATGCTGTTCCTAGTGATTGGTTTACTACAAAGAAGAAGCAAGTTTTCATTGATAGTGGCATTAGAATCATTTTTGTGGGGTCACAGATTCTGGAGAAACTTATTGTGCATGGTTCAGTTGATGATATAAGGGAAGTGCTGGAAAGAAGTGACCCATTATGGAAATGTGTGGACTCGAAAAACCGAAACGGCGAAAGGTTACTTCACTTGGCTGTTTCACAAGGAAGACCTGATCTTGTTCAATTACTCCTTGAATTCAAGCCTGATTTAGAAGGTAGAAGTTGTTCTGGGTTGACCGCGCTCGAAGTTGCGTCGTACTCGGGGGAATGCTTAATTGCTGAGCTTCTATTGGCTCATAGAGCCAATACAGAAAGATCAGAATCATTCATGTTTGGTCCAATTCATTATGCTGCAAGAAATGGTCACATAGAGATTCTAAGGCTTCTATTACTCAAAGGTGCAAAAGTTGATTCTCTCACAAAAGATGGCAACACTGCCTTGCACCTTGCAGTTGAAGAGCATAGAAGAGACTGTGCTAGGATTCTATTATCAAATGGCGCGAGGATCGATATTCGAAACGCCGGAGAAGGCGATACCCCTTTGCATATAGCAGCATCAACAGGAGATGACAACATGGTCAATCTCTTATTGCAAAAGGGTGCTAACAAAGATGTGAGGAATAGACAAGGGAAGACAGCATATGATTTCGCAGCCGAAAATGGCCATTTTAGCCTCTTCGACGCGCTTTGCTTGGGAGACAAGTTATGCATTGCTGCAAGGAAAGGTGAAGTTAGGACAATCCTGAAGATACTAGAGAGTGGTGCAGCTATCAATGGAAGGGACCAAAATGGATGGACTGCACTACATAGAGCCTCATTCAAAGGGAGAATAGACTCGGTTCGGATTCTTTTGGAGAAAGGGATTGATTTTGATGCAAAGGATGAAGAAGGGTACACTGCATTGCATTGTGCATCTGAATCAGGACATGCTGATGTTACAGATTTGTTGGTGAAAAAAGGTGCAGATGTTGAAGCTAGAACAAGTAAAGGTGTGACTGCATTTCAAATAGCTGAGTCATTACACTATGTTGGGATCACTAGGATACTTGTACAAAATGGTTAG | 1449 | 0.412 | MDRLISLDPSNIVPIRIEQGQKCYGRVTLCNVMYTMPVAFRLQPLNKAHYNVKPQSGIISPLATITLEIIYYFSSGSILPHSFPHSQDSFLLHSVIVPGALIKGPCSMFDAVPSDWFTTKKKQVFIDSGIRIIFVGSQILEKLIVHGSVDDIREVLERSDPLWKCVDSKNRNGERLLHLAVSQGRPDLVQLLLEFKPDLEGRSCSGLTALEVASYSGECLIAELLLAHRANTERSESFMFGPIHYAARNGHIEILRLLLLKGAKVDSLTKDGNTALHLAVEEHRRDCARILLSNGARIDIRNAGEGDTPLHIAASTGDDNMVNLLLQKGANKDVRNRQGKTAYDFAAENGHFSLFDALCLGDKLCIAARKGEVRTILKILESGAAINGRDQNGWTALHRASFKGRIDSVRILLEKGIDFDAKDEEGYTALHCASESGHADVTDLLVKKGADVEARTSKGVTAFQIAESLHYVGITRILVQNG* | 483 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan20g1458 | 482 | PANTHER | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED | 1 | 482 | - | - | |
| Lan20g1458 | 482 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 4 | 135 | IPR000535 | - | |
| Lan20g1458 | 482 | ProSiteProfiles | Ankyrin repeat region circular profile. | 271 | 302 | - | - | |
| Lan20g1458 | 482 | ProSiteProfiles | Ankyrin repeat profile. | 271 | 303 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | Gene3D | - | 361 | 429 | IPR036770 | - | |
| Lan20g1458 | 482 | ProSiteProfiles | Ankyrin repeat region circular profile. | 242 | 266 | - | - | |
| Lan20g1458 | 482 | ProSiteProfiles | Ankyrin repeat region circular profile. | 172 | 200 | - | - | |
| Lan20g1458 | 482 | SUPERFAMILY | PapD-like | 2 | 149 | IPR008962 | - | |
| Lan20g1458 | 482 | Gene3D | Immunoglobulins | 1 | 134 | IPR013783 | - | |
| Lan20g1458 | 482 | PRINTS | Ankyrin repeat signature | 306 | 321 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | PRINTS | Ankyrin repeat signature | 441 | 455 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | ProSiteProfiles | Ankyrin repeat region circular profile. | 392 | 424 | - | - | |
| Lan20g1458 | 482 | ProSiteProfiles | Ankyrin repeat profile. | 305 | 337 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | Gene3D | - | 430 | 481 | IPR036770 | - | |
| Lan20g1458 | 482 | Gene3D | - | 135 | 359 | IPR036770 | - | |
| Lan20g1458 | 482 | ProSiteProfiles | Ankyrin repeat profile. | 242 | 270 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | PANTHER | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE | 1 | 482 | - | - | |
| Lan20g1458 | 482 | Pfam | Ankyrin repeats (3 copies) | 164 | 231 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | Pfam | Ankyrin repeats (3 copies) | 305 | 359 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | Pfam | Ankyrin repeats (3 copies) | 242 | 302 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | Pfam | Ankyrin repeats (3 copies) | 364 | 455 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | SUPERFAMILY | Ankyrin repeat | 167 | 479 | IPR036770 | - | |
| Lan20g1458 | 482 | ProSiteProfiles | Ankyrin repeat profile. | 425 | 457 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | ProSiteProfiles | Ankyrin repeat profile. | 392 | 424 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | ProSiteProfiles | Ankyrin repeat region circular profile. | 425 | 455 | - | - | |
| Lan20g1458 | 482 | ProSiteProfiles | Ankyrin repeat profile. | 172 | 204 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | ProSiteProfiles | Ankyrin repeat region circular profile. | 305 | 337 | - | - | |
| Lan20g1458 | 482 | SMART | ANK_2a | 238 | 267 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | SMART | ANK_2a | 425 | 454 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | SMART | ANK_2a | 392 | 421 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | SMART | ANK_2a | 205 | 234 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | SMART | ANK_2a | 338 | 368 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | SMART | ANK_2a | 172 | 201 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | SMART | ANK_2a | 271 | 300 | IPR002110 | GO:0005515 | |
| Lan20g1458 | 482 | SMART | ANK_2a | 305 | 334 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan20g1458 | Lan-Chr20 | 21314256 | 21315704 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan20g1458 | 304 | 467 | Ion Channels | AT4G32500 | 27.411 | 1.94e-10 | 61.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan20g1458 | - | - | gmx:100782444 | 714.146 |