Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1452 ATGTTGTGGGTAGACAAGTATCGACCAAAAACCCTTGACCATGTTGTGGTCCACGATCTCATCGCCCAAAATCTCAAGAAATTGGTTACTGAACAAGATTGTCCTCATTTGTTATTCTATGGGCCATCTGGGTCTGGCAAGAAAACCCTAATCATGGCTCTTCTTCGCCAAATGTTTGGACCCGGTGCCGAAAAGGTGAAAGTGGAAAATAGGACTTGGAAAGTGGATGCTGGGAGTAGATCTATTGATATAGAGCTAACAACATTACAAAGTGCTAATCACACTGAAATCAGTCCAAGTGACGCGGGCTTTCAGGACAGATATGTTGTTCAAGAAATAATTAAAGATATGGCTAAGAATAGACCCATTGATACTAAGGGGAAGAAAGGAGGATTCAAAGTGCTGGTGCTCAATGATGTTGACAAACTCTCTAGAGAAGCTCAGCATTCCCTACGCAGAACAATGGAAAAATACAGTGCTTATTGCAGATTGATTCTATGTTGCAATAGTTCTTCAAGAGTCACAGAAGCAATCCGTTCTCGTTGTCTAAATGTACGAATCAACGCACCAAGTGAAGAACAGATTGTTGATGTGTTAGAATTCATTGGTAAGAAAGAAGGGCTGCAACTTCCTTCTGGTTTTGCTGCTCGCATAGCTGAGAAATCAAATCGGAATTTAAGGAGGGCAATATTGTCATTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACTAGCAAACAAGCAATTCCCCCAATGGACTGGGAGGAATATATTTCTGAAATTGCATCGGACATAATGAAGGAACAAAGTCCTAAAAGGTTGTTTCAAGTTCGAGGAAAACTGTATGAGCTGCTAATCAATTGCATTCCCCCAGAGATCATTTTGAAGAGGCTTGTTTATGAACTACTGAGGAAACTGGATGATGAACTAAAGCATGAGGTTTGCCATTGGGCGTCATACTATGAACATAGGATGCGTCTCGGACAAAAGGCCATTTTTCATATCGAAGCATTCGTCGCTAAATTTATGAGCGTTTATAAATCATTCCTCATCGCAACATTCGGCTGA 1068 0.411 MLWVDKYRPKTLDHVVVHDLIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKVKVENRTWKVDAGSRSIDIELTTLQSANHTEISPSDAGFQDRYVVQEIIKDMAKNRPIDTKGKKGGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVDVLEFIGKKEGLQLPSGFAARIAEKSNRNLRRAILSFETCRVQQYPFTSKQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLVYELLRKLDDELKHEVCHWASYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1452 355 Pfam DNA polymerase III, delta subunit 21 189 - -
Lan20g1452 355 SMART AAA_5 33 193 IPR003593 -
Lan20g1452 355 CDD AAA 16 191 - -
Lan20g1452 355 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 347 - -
Lan20g1452 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 240 IPR027417 -
Lan20g1452 355 Gene3D - 191 249 - -
Lan20g1452 355 Gene3D - 253 346 - -
Lan20g1452 355 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 347 - -
Lan20g1452 355 Gene3D - 1 190 IPR027417 -
Lan20g1452 355 SUPERFAMILY post-AAA+ oligomerization domain-like 252 347 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1452 Lan-Chr20 21267733 21272672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1452 1 355 Core DNA Replication Machinery Family AT5G27740 83.099 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1452 K10756 - gmx:100818329 659.062