Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1433 ATGGGAAGCAGAAAGGAAGAAGAGAAGAGAGAGAAAATTATCAGGGGTCTCATGAAGCTTCCACCCAATCGAAGATGTATAAACTGTAATAGCATGGGACCTCAGTATGTTTGTACAAGTTTCTGGACCTTTGTTTGTGTGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCTATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGTGGTAACCAGCGTGCAAGGGAAACATATTTGAATAGTTGGGACTTCCAAAGGCAGCGGTTGCCAGATAACAGCAATGTTGCTAAAATAAGGGAGTTCATAAGAAATGTGTATGTGGACAGAAGATATGCTGGAGCGAAGTCTTCCGAAAAGCCTCCAAGAGATCCACAGAGCCCTACAGTCCAAGAGGATGACTTAAGACGTGCCAGTTCTTATCATTCATTTTCTCAAAGTCCTCCATATGATAATCAATATGAGGATCGACGATATGGGAAACAGGCATCTTCTCTGACCAGGAAGCCAGGTTCTGATAAAGTTCGATATGAAGGGAAGATGTCTAATATTATCTATAGTCCTGGTCGATTTAGTGATCATGCATTTGACGACAGATTTGCAAATGAGGGTTCTGGTCCGAGAATTTCTGACTTCTCTGTTTCTAGTGCTGGTGACCAATTCAAATCTGATGTTCAGTCTCCTACGTTTCATAAGGACGTTGGGCTTAGCAGTCCATCCTATCAGGGTTCTGGATCCAACTCAATTGAAGATGTATGGTCTCAAGCAAGGAATACAGTTCTGGGAACTAATGCCAAAAGAGATGCAGGTGGAACTCATGGTCCACAGAGAACTACATCATTACAATCAGCAAACAGCAACTTTTCATCCTTAAGATCTTACAATTCTGTTGGTGTAGTTGATTTTTTCTCTGAACCTGTCCAAGCTTCAGGATCCCTTCATAATAAAGCTGCTGGTGCTCCCCATTCATCTGGTCCTACAAGATCTGTTAGCATGAATCTTTCCAAGTTACCACTGGCCTCTGAACTGTTTCCCTCATCAACTCCATCTATTGATCTTTTTCAGTTACCTGGAGCACCACCTCAAGCTCCATTGGCGAATCTGTTTCAATCATCTGTTTTGTCTGCAGCTCCATCTTTCAATGAGAGTCAACCTATGCGAACACCCCAACCCTCATCTATTGACTTTTTTGCAGATCTTGGTCAGCAGCCATCTACTGAAACCTCAGCAGCAACATCTCATGTTCCATCGGTGGATCTCTTTCAATCCTCTGTTTTGTCTGCTGCTCCATCTTTCAACCAGAATCATCCTGGACAAATATTGCAACCCTCATCTATTGACTTCTTTGAAGATCATTCTCAGCCGCCATTTACTACAAACCCAACAGCTCCAAATGAAGCTCCATCAGTAAACCTGTTTCAATCATCCGTTTTGTCTGCAGTTTCATCATTCACTGAGGATCAATCTACCCAAACATCCCAAACACCACCAATTGACTTCTTTGCAGATGTCTCTCAGAAGCCTTCTACAGTAACCTCAGATGAGCAGTCACTGGAGTTATCTGTCCCTAAAAATGAAGGGTGGGCAGTGTTTGATATGCCTCAGAGCACATCATCTACTGCACAAGTTGGGACTCCTGCTGCAGCACCTTCAAGTGAAGGATCTTCGCAGGAAAGATTTGACCCATTTTCAAACTTCAATGCAAACATGCAATTGCCATCTGTTAGTTCACCACCTTCTTCAGCTACATCTAACTTATGGCTTGATGGTGTGTGGAATGTAGAAGAAAAGGTTCCTGATATTGCAACAGACACTCAACCATGGAATGCATTTGAAAGTTCTGGTAACCATCTTCCTGTGGACGCTGATAATCAATTTTTGGGTTCAAGAGCTTCTGAGTTTGGTGTATCCAAGGAAGGTGGTATACAAGGGATTGCCTCTTTTGTTGGATTTGATAATCATGACATCCCACCACATGTCAGTGCTTCACCAAACCTTTCACGCACTCTTCCTCTAGTGGGAGATATGCAATCTAATGGAATCGGTTCTAAGTCAACAAATCCATTTGATTATCCCTATGATTCTGATGTAGAACACACCAATATGTTCCTTGATGTGAGCTCTTTGCAAGCTTCTCTGCCGGATGCCCTTTTGCCTGCCACCTTTGGTGGTGGTATAGCTGAACCATGGCAGCATCCTCAAAATATGTCAACCTCATGTATTTCCTCGACAGACCAAGGTGGTTTGTCATTCATGTCTGCGCAACCACTAAGTTCTCAGATTCAGAACGTCAAGACACCAGAACCAGTTGCTTCTTTTGGGGGAAATCCTTTTGCATAA 2367 0.4288 MGSRKEEEKREKIIRGLMKLPPNRRCINCNSMGPQYVCTSFWTFVCVTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRARETYLNSWDFQRQRLPDNSNVAKIREFIRNVYVDRRYAGAKSSEKPPRDPQSPTVQEDDLRRASSYHSFSQSPPYDNQYEDRRYGKQASSLTRKPGSDKVRYEGKMSNIIYSPGRFSDHAFDDRFANEGSGPRISDFSVSSAGDQFKSDVQSPTFHKDVGLSSPSYQGSGSNSIEDVWSQARNTVLGTNAKRDAGGTHGPQRTTSLQSANSNFSSLRSYNSVGVVDFFSEPVQASGSLHNKAAGAPHSSGPTRSVSMNLSKLPLASELFPSSTPSIDLFQLPGAPPQAPLANLFQSSVLSAAPSFNESQPMRTPQPSSIDFFADLGQQPSTETSAATSHVPSVDLFQSSVLSAAPSFNQNHPGQILQPSSIDFFEDHSQPPFTTNPTAPNEAPSVNLFQSSVLSAVSSFTEDQSTQTSQTPPIDFFADVSQKPSTVTSDEQSLELSVPKNEGWAVFDMPQSTSSTAQVGTPAAAPSSEGSSQERFDPFSNFNANMQLPSVSSPPSSATSNLWLDGVWNVEEKVPDIATDTQPWNAFESSGNHLPVDADNQFLGSRASEFGVSKEGGIQGIASFVGFDNHDIPPHVSASPNLSRTLPLVGDMQSNGIGSKSTNPFDYPYDSDVEHTNMFLDVSSLQASLPDALLPATFGGGIAEPWQHPQNMSTSCISSTDQGGLSFMSAQPLSSQIQNVKTPEPVASFGGNPFA* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1433 788 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Lan20g1433 788 MobiDBLite consensus disorder prediction 122 184 - -
Lan20g1433 788 MobiDBLite consensus disorder prediction 226 257 - -
Lan20g1433 788 SMART arf_gap_3 8 129 IPR001164 GO:0005096
Lan20g1433 788 MobiDBLite consensus disorder prediction 273 293 - -
Lan20g1433 788 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 419 - -
Lan20g1433 788 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 440 788 - -
Lan20g1433 788 SUPERFAMILY ArfGap/RecO-like zinc finger 11 122 IPR037278 -
Lan20g1433 788 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Lan20g1433 788 MobiDBLite consensus disorder prediction 545 569 - -
Lan20g1433 788 PANTHER ARFGAP/RECO-RELATED 1 419 IPR044820 GO:0005096
Lan20g1433 788 PANTHER ARFGAP/RECO-RELATED 440 788 IPR044820 GO:0005096
Lan20g1433 788 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Lan20g1433 788 CDD ArfGap_AGFG 11 121 - -
Lan20g1433 788 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lan20g1433 788 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lan20g1433 788 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1433 Lan-Chr20 20992043 21013626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1433 14 137 C2H2 Transcription Factor Family AT3G07940 30.597 4.93e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1433 K15044 - gmx:100788316 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0210 5 2573163 2582701 Lan20g1433 20 20992043 21013626 LSH