Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1421 ATGGGTAATGAAGAAAACACAAGAATGAATAATCACAAGATGGAGGAAGTAGTTGAAGAAAGAGATCAAGAACACAATCCATTGAATGAGCCACTACTAATCAAAAGGAATAGAACACTTTCTGGAAATCCACTTGCTTTGGTTGGATCAAAAGTTTCATACATAGAAAGCTTGGACTATGAGATCAATGAGAATGATTTATTCAAACAAGATTGGAGGAGTAGATCAAGAATTCAAGTGTTGCAATATATATTCTTGAAATGGTCACTTGCATTTCTTGTAGGACTTTTTACTGGTATTATAGCTACTCTCATCAATCTTGCTATTGAGAACATTGCAGGGTATAAGCTTCTTGCTGTTGTTGAATATATCCAAAATGAAAGGTATTTGACAGGTTTGGTTTTCTTCATGGGGTTTAATTTGGTTTTGACATTCATTGCTGCTATACTGTGTGTGTGTTTTGCACCCACAGCAGCTGGACCTGGAATACCAGAAATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTATGGTGCCAATGTTTTGTTTGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGCCTAGATTTAGGAAAAGAAGGACCCTTGGTACATATTGGCAGCTGCATTGCTTCATTACTAGGCCAAGGAGGCCCTGACAACTACCGAATAAAATGGCGATGGCTGCGATATTTCAACAACGATCGTGACCGTCGTGATCTTATCACAAGTGGTGCTTCTTCAGGGGTTTGTGCAGCTTTCAGGGCCCCTGTAGGAGGAGTTCTGTTTGCTCTAGAAGAGGTAGCAACTTGGTGGAGAAGTGCACTTCTTTGGAGAACTTTTTTCAGCACTGCTGTGGTTGTTGTAGTGCTGAGGGCATTCATTGAACTATGCCATGAAGGGAAATGTGGTCTTTTTGGTGCAGGAGGGCTTATCATGTTTGATGTGAGCAATGTTAGTGTGAGTTACAATGTGATGGGTATGATCCCTGTTGTAATCATTGGAGTCATTGGTGGGCTATTAGGAAGCCTTTATAACCATCTTCTCCACAAGGTCCTTCGTCTCTACAATCTCATCAATCAGAAAGGAAAAATGTATAAGCTTCTGCTAAGTCTTGCAGTTTCACTCTTCACATCAGTGTGCCAATATGGTCTCCCATTCGTAGGAAATTGCACTCCCTGTGATCCGTCACTTCCGGAGTCGGTCTGCCCCACGAACGGAAGGTCTGGAAATTACAAACAATTCAACTGCCCAAAAGGGCACTACAATGATCTTGCTACTCTCCTTCTTACCACTAATGATGATGCTGTCAAAAACATATTCTCAACCAACACTCCTCTTGAATACCAACCAACCTCCATCATAATTTTCTTCATACTCTATTGCATATTAGGACTAATAACCTTTGGAATCGCGGTGCCATCTGGTCTCTTCCTCCCAATCATACTTATGGGTTCGGGTTATGGCCGCCTTCTTGGCATCATCATGGGACCTCATACAAACATTGACCATGGATTGTTAGCGGTTCTTGGTGCAGCTTCCCTCATGGCTGGTTCTATGAGGATGACTGTATCCCTTTGTGTGATTTTTCTCGAACTAACGAACAACCTTCTCCTACTACCGATAACCATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGACAGTTTCAACCCAAGCATCTATGAGATCATACTCCACCTAAAAGGCCTTCCATTCATGGACGCAAATCCTGAGCCGTGGATGAGAAATCTCACAGTTGGAGATCTTGTTGACGTAAAGCCACCCGTGGTTACCCTTAGCGGAGTAGAAAAGGTATCCAATATAGTTGATGCCTTGAAAAACACTACACATAATGGTTTTCCTGTGATGGATGAGAGGGTAGTACCACCAACAGGAGTGGCTAGTGAGGCAACAGAACTGCATGGGCTGATTCTAAGAGCACATCTCATCCAAGTGCTAAAGAAGAAGTGGTTCTTGAAAGAGAGAAGGAGAACTGAGGAATGGGAAGTTAGAGAGAAATTTACTTGGGTGGAACTTGCTGAAAGAGAAGGGAATATTGAAGAGGTGGCTGTGACAAGAGATGAAATGGAGATGTTTGTTGATCTACATCCTCTAACCAATACAACCCCTTTTACAGTGTTAGAGAGCATGTCAGTAGCAAAAGCAATGCTCCTCTTCAGACAAGTAGGACTTCGCCATATGCTCGTCGTACCCAAGTATCAAGCAACCGGGGTATCTCCTGTAATTGGGATCTTGACCAGGCAGGATCTATTGGCACATAACATTCTGTCAGTGTTTCCTCACCTGGCAAAACCTAAGGGCAGAGAAAAGAAGAATTGA 2355 0.4242 MGNEENTRMNNHKMEEVVEERDQEHNPLNEPLLIKRNRTLSGNPLALVGSKVSYIESLDYEINENDLFKQDWRSRSRIQVLQYIFLKWSLAFLVGLFTGIIATLINLAIENIAGYKLLAVVEYIQNERYLTGLVFFMGFNLVLTFIAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGANVLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITSGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCHEGKCGLFGAGGLIMFDVSNVSVSYNVMGMIPVVIIGVIGGLLGSLYNHLLHKVLRLYNLINQKGKMYKLLLSLAVSLFTSVCQYGLPFVGNCTPCDPSLPESVCPTNGRSGNYKQFNCPKGHYNDLATLLLTTNDDAVKNIFSTNTPLEYQPTSIIIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIIMGPHTNIDHGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGDLVDVKPPVVTLSGVEKVSNIVDALKNTTHNGFPVMDERVVPPTGVASEATELHGLILRAHLIQVLKKKWFLKERRRTEEWEVREKFTWVELAEREGNIEEVAVTRDEMEMFVDLHPLTNTTPFTVLESMSVAKAMLLFRQVGLRHMLVVPKYQATGVSPVIGILTRQDLLAHNILSVFPHLAKPKGREKKN* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1421 784 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 5 779 - -
Lan20g1421 784 MobiDBLite consensus disorder prediction 1 25 - -
Lan20g1421 784 Pfam CBS domain 713 763 IPR000644 -
Lan20g1421 784 SMART cbs_1 714 767 IPR000644 -
Lan20g1421 784 SMART cbs_1 600 659 IPR000644 -
Lan20g1421 784 CDD CBS_pair_voltage-gated_CLC_euk_bac 598 765 - -
Lan20g1421 784 Gene3D Clc chloride channel 79 580 - -
Lan20g1421 784 PANTHER CHLORIDE CHANNEL PROTEIN 5 779 - -
Lan20g1421 784 SUPERFAMILY Clc chloride channel 65 580 IPR014743 -
Lan20g1421 784 ProSiteProfiles CBS domain profile. 711 776 IPR000644 -
Lan20g1421 784 CDD ClC_6_like 56 578 - -
Lan20g1421 784 Pfam Voltage gated chloride channel 144 558 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan20g1421 784 SUPERFAMILY CBS-domain pair 582 764 IPR046342 -
Lan20g1421 784 Gene3D - 581 770 IPR046342 -
Lan20g1421 784 PRINTS Chloride channel signature 156 173 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan20g1421 784 PRINTS Chloride channel signature 187 206 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan20g1421 784 PRINTS Chloride channel signature 251 270 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan20g1421 784 PRINTS Chloride channel signature 477 497 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan20g1421 784 PRINTS Chloride channel signature 509 525 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan20g1421 784 PRINTS Chloride channel signature 527 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan20g1421 784 PRINTS Chloride channel signature 565 579 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan20g1421 784 MobiDBLite consensus disorder prediction 8 25 - -
Lan20g1421 784 PRINTS Plant CLC chloride channel signature 61 69 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lan20g1421 784 PRINTS Plant CLC chloride channel signature 272 280 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lan20g1421 784 PRINTS Plant CLC chloride channel signature 286 296 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lan20g1421 784 PRINTS Plant CLC chloride channel signature 304 311 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lan20g1421 784 PRINTS Plant CLC chloride channel signature 429 445 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1421 Lan-Chr20 20871036 20876146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1421 19 779 Ion Channels AT3G27170 78.844 0.0 1231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1421 K05016 - gmx:778094 1335.47