Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1414 ATGACGGTTTTCTCCGCCGGAAATCAGTTTAATCCGGTGAACTACGTGGCCGAGGTGTCACAGCGCCTTCTAGAAGCTTCTCACTCCGGCGATCTCATTTCCGCCTTGAACTGCATTGCCGATCCCTTCGTCGACGTCAACTTCGTCGGCGTTGTCACTTTGAGGACACGAAGGACTGAGTTAGTTCTTTTCAACGAATCGCCGAGTCAGGTCCGAGTGGAGTTCGATGAGTTCAAATCCGATGTCACGCCTTTGTTCCTCGCTGTTCATGCAGGGAATGCGAAACTCGTGAGGAAGTTACTGAATGTGGGAGCTGATGTAAACCAGAAGCTTTTCAGAGGCTTTGCAACAACTGCGGCAGTGAGGGAAGGCCACCTTGATATTCTTCAGATATTACTCAAAGCTGGGGCATCACAGGCAGCATGTGAAGAAGCTCTTTCGGAGGCAAGCTGTCATGGACATGCAGAGCTTGCAGAATTGCTCATGAGCTCTGAATTGATCCGACCCCATATAACTGTACACGCTTTGGTGACTGCATGCTGTAGGGGATTCATAGATGTCATTCAGACACTCATAAAGTGTGGTGTGGATGTGAGTGCCACAGACCGTTTGCTTTTACAGTCAATTAAGCCTTCTCTCCACACAAATGTGGATTGTACTGCACTTTTTGCTGCTGTAATTCACAGACAGATCTCTGTCGTTTGTTTGCTGTTGAAGAATGGTGCTAGGTTAGACTATGAAGCAAGGCTTGGAGCATGGTCATGGGACATGTCAACGGGTGAAGAGATTCGTGTGGGAGCTGGGCTGGGAGAATGCTATCCTATCACCTGGTGTGCAGTTGAGTATTTTGAAAAGAGTGGTGATATACTGCTCATGCTCTTGCATCACGTCTCCCACAACGCTCCTCACTGTGGAAGAACCCTTCTGCACCATGCTATCCTCTGTGGCAATATTGAGGCTGTTAGGATACTCTTAGAATATGGTGTGGATGTGGAATCGCCTGTCAAAACAACTACCTGTCAGACAAAGTTTCATCCAATACACATGGCTTCTCGTCTTGGCTTATCAACTATTGTTCAATGTCTTATTGATTTCGGTTGCAATTTGAACTCTACAACAGACGCTGGTGATACAGCTTTGATGATATGTGCAAAATATAAACAAGAGAAGTGTTTCAACGTACTGACAAGTGCTGGTGCTGATTTTGGCATAGTGAATACTGCTGGACAATCTGTTTGTTCAATTGCTGAGTCAACACATTGGTGGCTTGGTTTTCAGCAAGCAGTGTTGCATACAATCCGAAATGGAAAGATACCCAAATCCAGAAATCCTTCAGCTTTCTCCCCCATAATGTTTGCCGCACAAGTTGGGGATGCCGAATCTTTGAAAATGGTCATTGGTTCTGGAGAATTTGATCTTGACTACCAAGATGATAATGGTTTTTCTGCAGTTATGGTTACTGCTTTGAAGGGTCATGTGGAATCATTCCGATTGCTTGTATATGCTGGAGCTGATATAAGCTTGTGCAATAAAGCAGGAGAAACAACACTAACCCTATCTGAATTTAATCCTAGATCTGATTTATTTGAAAAGGTAATGCTTGAATTTGCACTTCATAAGAGAAACTGCAATGTGGGTGGCTTTTATGCTTTACATTATGCAGCTCGTGACGGTAACTTGAATGCTGTAAAATTGCTCACTAGTAAGGGTTATGATGTGAATGCCTTTGATGGTGGCCACTACACTCCCCTAATGTTAGCAGCAAGGGAAGGCCACAGGTCCATTTGCGAGCTTCTAATTTCGAATGGAGCCAACTGCAATGCTAAGAATACCAGAGGGGAAACTGCACTTTCACTTGCAAGAAACAAAGGAATGAAAAACGACGCAGAGGCTGTTATACTCGATGAACTTGCTCGTAGATTAGTATTAGGTGGTGCGTATGTTCAGAAGCATACTAAAGGAGGAAAGGGATCCCCACACGAGAAACATTTACAAATGTTAGAATCCAAACGTGTGCTTCGTTGGGGAAAATCTGGCCGCAAAAATGTTATGTGTTGTGAGGCAGAGTTGGGGCCAAGCTCAACATTCCGTAGAAATCGGTATAATAAAGGTGATGTTGATGAACCTGGAATGTTTAGGGTGCTTACAAAAACAAACAAGGAAGTGCATTTTGTATGTGATGGAGGATTAGAAGTTGCTGAGCTTTGGGTGAGAGGTATTAAACTTGTAAAGTAG 2235 0.4421 MTVFSAGNQFNPVNYVAEVSQRLLEASHSGDLISALNCIADPFVDVNFVGVVTLRTRRTELVLFNESPSQVRVEFDEFKSDVTPLFLAVHAGNAKLVRKLLNVGADVNQKLFRGFATTAAVREGHLDILQILLKAGASQAACEEALSEASCHGHAELAELLMSSELIRPHITVHALVTACCRGFIDVIQTLIKCGVDVSATDRLLLQSIKPSLHTNVDCTALFAAVIHRQISVVCLLLKNGARLDYEARLGAWSWDMSTGEEIRVGAGLGECYPITWCAVEYFEKSGDILLMLLHHVSHNAPHCGRTLLHHAILCGNIEAVRILLEYGVDVESPVKTTTCQTKFHPIHMASRLGLSTIVQCLIDFGCNLNSTTDAGDTALMICAKYKQEKCFNVLTSAGADFGIVNTAGQSVCSIAESTHWWLGFQQAVLHTIRNGKIPKSRNPSAFSPIMFAAQVGDAESLKMVIGSGEFDLDYQDDNGFSAVMVTALKGHVESFRLLVYAGADISLCNKAGETTLTLSEFNPRSDLFEKVMLEFALHKRNCNVGGFYALHYAARDGNLNAVKLLTSKGYDVNAFDGGHYTPLMLAAREGHRSICELLISNGANCNAKNTRGETALSLARNKGMKNDAEAVILDELARRLVLGGAYVQKHTKGGKGSPHEKHLQMLESKRVLRWGKSGRKNVMCCEAELGPSSTFRRNRYNKGDVDEPGMFRVLTKTNKEVHFVCDGGLEVAELWVRGIKLVK* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1414 744 Pfam Ankyrin repeat 304 331 IPR002110 GO:0005515
Lan20g1414 744 ProSiteProfiles Ankyrin repeat profile. 479 511 IPR002110 GO:0005515
Lan20g1414 744 PANTHER ANKYRIN REPEAT-CONTAINING 6 743 - -
Lan20g1414 744 Gene3D - 13 172 IPR036770 -
Lan20g1414 744 SUPERFAMILY Ankyrin repeat 78 253 IPR036770 -
Lan20g1414 744 ProSiteProfiles Ankyrin repeat profile. 546 578 IPR002110 GO:0005515
Lan20g1414 744 PANTHER ANKYRIN DOMAIN PROTEIN 6 743 - -
Lan20g1414 744 Gene3D - 420 530 IPR036770 -
Lan20g1414 744 Gene3D - 265 338 IPR036770 -
Lan20g1414 744 ProSiteProfiles Ankyrin repeat region circular profile. 479 511 - -
Lan20g1414 744 SUPERFAMILY Ankyrin repeat 302 633 IPR036770 -
Lan20g1414 744 PRINTS Ankyrin repeat signature 305 320 IPR002110 GO:0005515
Lan20g1414 744 PRINTS Ankyrin repeat signature 595 609 IPR002110 GO:0005515
Lan20g1414 744 ProSiteProfiles Ankyrin repeat profile. 304 336 IPR002110 GO:0005515
Lan20g1414 744 ProSiteProfiles Ankyrin repeat region circular profile. 579 610 - -
Lan20g1414 744 Pfam Ankyrin repeats (3 copies) 535 610 IPR002110 GO:0005515
Lan20g1414 744 Pfam Ankyrin repeats (3 copies) 85 164 IPR002110 GO:0005515
Lan20g1414 744 ProSiteProfiles Ankyrin repeat region circular profile. 304 332 - -
Lan20g1414 744 SMART ANK_2a 111 141 IPR002110 GO:0005515
Lan20g1414 744 SMART ANK_2a 375 404 IPR002110 GO:0005515
Lan20g1414 744 SMART ANK_2a 304 333 IPR002110 GO:0005515
Lan20g1414 744 SMART ANK_2a 171 200 IPR002110 GO:0005515
Lan20g1414 744 SMART ANK_2a 579 608 IPR002110 GO:0005515
Lan20g1414 744 SMART ANK_2a 342 371 IPR002110 GO:0005515
Lan20g1414 744 SMART ANK_2a 546 575 IPR002110 GO:0005515
Lan20g1414 744 SMART ANK_2a 445 475 IPR002110 GO:0005515
Lan20g1414 744 SMART ANK_2a 479 508 IPR002110 GO:0005515
Lan20g1414 744 SMART ANK_2a 80 109 IPR002110 GO:0005515
Lan20g1414 744 SMART ANK_2a 217 246 IPR002110 GO:0005515
Lan20g1414 744 ProSiteProfiles Ankyrin repeat profile. 579 611 IPR002110 GO:0005515
Lan20g1414 744 Gene3D - 339 419 IPR036770 -
Lan20g1414 744 ProSiteProfiles Ankyrin repeat region circular profile. 546 577 - -
Lan20g1414 744 ProSiteProfiles Ankyrin repeat region circular profile. 80 108 - -
Lan20g1414 744 Gene3D - 173 264 IPR036770 -
Lan20g1414 744 Gene3D - 531 638 IPR036770 -
Lan20g1414 744 ProSiteProfiles Ankyrin repeat profile. 342 374 IPR002110 GO:0005515
Lan20g1414 744 ProSiteProfiles Ankyrin repeat profile. 80 112 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1414 Lan-Chr20 20807569 20812152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1414 452 673 Ion Channels AT4G32500 27.928 4.27e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1414 - - gmx:100777347 1103.97