Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1405 ATGGTAAAGGAAACTTCAAACTCTTTCTCCAATCTCTCACTCTTTATTTCAACCACCCTTCTCTTATTCCAACTAACCTATTCCATTAACCATCACCAACCATGTTCACCTTCTTCTTGTGGCAAAATTCATAACATAACTTATCCATTCAGACTCAAATCTGATCCAATCCATTGTGGTGACTCAAGATACGAATTAGAATGCAATAACAACAACAACTCAACACTGTTATTATTACCTCTCTTCTCAGCAAAATACATTGTTCAACACATCGATTACAACGCATACAAAATCATCTTAACCGATCCTGGTGTAGTTCAAGATTCTACTTGCTCCTTCATTCCACGTTATTTCTTATCATACACCAGTTTTAAAACCATTATTGGTCCTGATGATTTTGGTTCAGAACCGTTTACTAACCCTAGTTATCTATATAGAGTGGGTTACTTCAACTGCACTAATCCGGTTACTATTAACGATGATTATGATCTTAAATATGTTAAAGTTGATGTGAGTAATTGCACTGAGTATGGAAACAATGAACATGTTTATGTTGTTTTGGAAACAACGTTGTTTGATTATCGCGTGAGTGATATTAGGGTTGGGTGTAGCCTTAAGGTGGCTACGTTGGCGGGTACGAGGTTGTCGGAGATTGGAAACGACAACGTTTCGTATGATGAGATAAGAAGAGTGGTGGCTGAAGGGTTTGAGGTTTCATGGTTTGCGATTGTGTGTGAAGATGAATGTGGAAAAGGGGTTGATTGTGAAGTTGTTGATGAAAAAAGTGGACAAGTCAAATGTGATAAGCGATATTGTCATTATGCTTATCATACAACTGATAAATGTGGATTTTTGCAACAGATCATTGGTTATACTGCAGCTTATCTCAGAGGCATTATAATTGGAATATACAGTAGAATATCATTTAGCACCAGATTATTGGACAACCCTGTTGGTCTACACTATTTTGATGCAGGAACATATATAGGAAGAAATATTCTACCATCTTTTGTTGCAATCAGATATTTGTTTGGAGTTGCATTTTTTCTTCTCTTAATGATTTTTAAATGGCGAAGAAGACATTTATCAATGTATGAAAACATTGAAAATTTTCTGCTAGACAACAACAACCTTAATCCCATAAGGTATGAGTACAAAGAAATCAAGAAAATGAGTGGTGGTTTCAATGTGAAATTGGGTCAAGGAGGTTTTGGTTCTGTTTACAAAGGAAAACTACGTAGTGGGGTTGATGTAGCAATAAAAATGTTGAGTAAATTCAATCCTAATGGACAAGACTTTATCAATGAAGTTGCTACAATTGGAAGAATACATCATGTTAATGTGGTGCGTCTTGTTGGGTATTGTGTTGAAGGTAAAAAACGTGCTCTTGTTTATGAATTTATGCCTAATGGGTCATTGGATAAGTATATATTTTCTAAAGAAGAAAGTAGTGTACATTTGAGTTATGCAAAAATATATGAAATATCTCTAGGTATAGCTCATGGTATTGAATATTTACATCAAGGTTGTGATATGCAAATTTTGCATTTTGATATCAAGCCTCATAATATTCTTCTAGATGAAAACTTTATCCCTAAAGTTTCGGATTTTGGACTTGCAAGACTATATCCTTTAGATGGTAGCATTGCTCCTTTAACTCAAGCTAGAGGAACTTTGGGTTACATGGCTCCGGAATTGTTCTATAAAAACATTGGAGGATTGTCTTATAAGGTTGATGTGTATAGTTTTGGAATGTTGTTGATGGAAATGACAAGTAAGAGGAAGAACTCAAATCCTCATGCAGAGCATTCAAGCCAAGCTTACTTCCCCTTTTGGATACATGATCGATTTCTTGAGGAAAAAGATATCGAAATCGAAAATGCCTCGGATGAGGATAATGATGTAGCGAAAAGGATGTTCTTGGTTGCTCTTTGGTGTATACAATTGAAACCAAGTGATCGCCCTTCAATGAGCAAGGTAGTTGAGATGCTTGAAGGTAAAACTAAAAGCCTTGAAATGCCTCCAAGGCCTTCATACTATCCACAAGAAAAGTTTCAACATGATGATGACGATAATGATGATTTCAACTCTAACCAAACATCATGGAGTGGTTCCTCAAGTTTTGATGGTCATCATGGCCAAACCATAACTAATCATCAAGAGAGTAGTGCTAGAGAAATAGAGACATAG 2190 0.3575 MVKETSNSFSNLSLFISTTLLLFQLTYSINHHQPCSPSSCGKIHNITYPFRLKSDPIHCGDSRYELECNNNNNSTLLLLPLFSAKYIVQHIDYNAYKIILTDPGVVQDSTCSFIPRYFLSYTSFKTIIGPDDFGSEPFTNPSYLYRVGYFNCTNPVTINDDYDLKYVKVDVSNCTEYGNNEHVYVVLETTLFDYRVSDIRVGCSLKVATLAGTRLSEIGNDNVSYDEIRRVVAEGFEVSWFAIVCEDECGKGVDCEVVDEKSGQVKCDKRYCHYAYHTTDKCGFLQQIIGYTAAYLRGIIIGIYSRISFSTRLLDNPVGLHYFDAGTYIGRNILPSFVAIRYLFGVAFFLLLMIFKWRRRHLSMYENIENFLLDNNNLNPIRYEYKEIKKMSGGFNVKLGQGGFGSVYKGKLRSGVDVAIKMLSKFNPNGQDFINEVATIGRIHHVNVVRLVGYCVEGKKRALVYEFMPNGSLDKYIFSKEESSVHLSYAKIYEISLGIAHGIEYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLARLYPLDGSIAPLTQARGTLGYMAPELFYKNIGGLSYKVDVYSFGMLLMEMTSKRKNSNPHAEHSSQAYFPFWIHDRFLEEKDIEIENASDEDNDVAKRMFLVALWCIQLKPSDRPSMSKVVEMLEGKTKSLEMPPRPSYYPQEKFQHDDDDNDDFNSNQTSWSGSSSFDGHHGQTITNHQESSAREIET* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1405 729 CDD STKc_IRAK 399 666 - -
Lan20g1405 729 MobiDBLite consensus disorder prediction 696 722 - -
Lan20g1405 729 PANTHER RUST RESISTANCE KINASE LR10-RELATED 16 696 IPR045874 GO:0004672
Lan20g1405 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Lan20g1405 729 Pfam Wall-associated receptor kinase galacturonan-binding 35 102 IPR025287 GO:0030247
Lan20g1405 729 Gene3D Transferase(Phosphotransferase) domain 1 468 674 - -
Lan20g1405 729 ProSiteProfiles Protein kinase domain profile. 393 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1405 729 ProSitePatterns Protein kinases ATP-binding region signature. 399 421 IPR017441 GO:0005524
Lan20g1405 729 SMART serkin_6 393 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1405 729 Gene3D Phosphorylase Kinase; domain 1 370 467 - -
Lan20g1405 729 Pfam Protein kinase domain 397 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1405 729 SUPERFAMILY Protein kinase-like (PK-like) 379 665 IPR011009 -
Lan20g1405 729 MobiDBLite consensus disorder prediction 667 729 - -
Lan20g1405 729 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 16 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1405 Lan-Chr20 20732964 20736401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1405 340 694 Receptor kinase-like Gene Family AT5G38280 44.932 3.48e-101 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lan20g1405 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1405 - - lja:Lj0g3v0275229.4 918.302