Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1392 ATGACTCACTTTTCATGTTTCCTTATTCTTTTTGCTATGTTTCTTTTGACAACTAGATTTGTTTCATCCTCTGCAGTTCAAGACCCTGAACTAGTTGTACAAGATGTACAAAGGAGCATCAATGCCTCTAGGAGAAACTTGGGTTATCTATCATGCGGAACGGGTAACCCAATTGACGATTGTTGGCGATGCTACCCGAATTGGGAGAACAACCGGCAGAGGCTAGCTGATTGCGCAATTGGGTTTGGCAAGGACGCGATAGGTGGAAGAAATGGTAAAATCTATGTCGTCACCGATTCTGGTGACGACGATCCGGTGAACCCAAGACCCGGAACTTTAAGGCATGCAGCCATACAAGATGAGCCATTATGGATAATTTTCCAAAGAGATATGGTAATCACATTGAAAGAAGAGCTTCTAGTGAACTCATTCAAGACAATTGATGGAAGAGGTGCTAGTGTCCACATTGCTAGTGGAGGATGCATTACCATACATTATGTGAGTAACATAATAATCCATGGGATTCATATTCATGATTGTAAGCCAAGAGGGAACACAAATATTAGAAACTCACCACAACATTCAGGGTTTTGGACAATTTCAGATGGTGATGGAATTTCAATATTTAATTCAAAGCATATATGGGTTGATCATTGTTCATTATCTAATTGCCATGATGGTTTAATTGATGCTATTCATGGATCCACAGCTATAACAATATCCAACAACTACTTTACTCATCATGACAAGGTCATGCTCTTGGGACATAATGATTATTACACACAAGACAAGGACATGCAGGTCACAATAGCTTTTAATCATTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGACATGGTTATTTTCATGTGGTGAACAATGACTATACTCACTGGGAAATGTATGCAATTGGTGGTAGTGCTAATCCTACAATTAACAGCCAAGGGAATAGGTTTCTTGCACCAAATATCAGGTTTAGCAAGGAAGTAACAAAGCATGAAGATGCTTCAGAAGATGAATGGAAGAACTGGAATTGGAGATCAGAGGGTGATTTGTTCTTGAATGGAGCATTCTTTAGACAATCTGGTGGTGGTGCTGGTGCTAGCTATGCTAGAGCCTCAAGTCTAAGTGCAAGACCTTCTTCTTTGGTTGGATCCATGACTGTCACTTCTGGTGCACTTATATGCCGGAAGGGCGCACATTGCTGA 1215 0.4066 MTHFSCFLILFAMFLLTTRFVSSSAVQDPELVVQDVQRSINASRRNLGYLSCGTGNPIDDCWRCYPNWENNRQRLADCAIGFGKDAIGGRNGKIYVVTDSGDDDPVNPRPGTLRHAAIQDEPLWIIFQRDMVITLKEELLVNSFKTIDGRGASVHIASGGCITIHYVSNIIIHGIHIHDCKPRGNTNIRNSPQHSGFWTISDGDGISIFNSKHIWVDHCSLSNCHDGLIDAIHGSTAITISNNYFTHHDKVMLLGHNDYYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDASEDEWKNWNWRSEGDLFLNGAFFRQSGGGAGASYARASSLSARPSSLVGSMTVTSGALICRKGAHC* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1392 404 PANTHER PECTATE LYASE 4 401 - -
Lan20g1392 404 SMART amb_all 130 327 IPR002022 -
Lan20g1392 404 Pfam Pectate lyase 137 321 IPR002022 -
Lan20g1392 404 PANTHER PECTATE LYASE 18-RELATED 4 401 IPR045032 GO:0030570
Lan20g1392 404 Gene3D - 55 397 IPR012334 -
Lan20g1392 404 SUPERFAMILY Pectin lyase-like 56 394 IPR011050 -
Lan20g1392 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Lan20g1392 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Lan20g1392 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Lan20g1392 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Lan20g1392 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Lan20g1392 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Lan20g1392 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Lan20g1392 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1392 Lan-Chr20 20636428 20639097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1392 7 404 Polysaccharide Lyase AT5G63180 74.876 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1392 K01728 - gmx:100810380 743.421