Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1386 ATGGGAAAAGAGAAGGTTCACATTAACATTGTCGTCATTGGACATGTCGATTCTGGGAAATCAACCACCACTGGCCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTTGAGAAAGAGGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGAATTACAATTGATATTGCTTTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCACCCGGACATCGTGATTTCATCAAAAACATGATTACTGGAACATCACAGGCTGACTGTGCTGTCCTTATTATTGATTCCACCACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGACAGACCCGTGAGCATGCTCTGCTTGCTTTCACTCTTGGAGTCAAGCAAATGATCTGTTGTTGTAACAAGATGGATGCCACTACACCCAAGTACTCTAAGGCTAGGTATGATGAAATCGTGAAGGAAGTTTCTTCTTACCTGAAGAAGGTTGGTTACAACCCAGACAAAATTCCTTTTGTGCCCATCTCTGGTTTCGAGGGAGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTACTTGAGGCTCTTGACCAGATCAATGAGCCCAAGAGACCCACAGACAAGCCTCTCAGGCTTCCATTGCAGGATGTCTACAAGATTGGTGGTATTGGAACTGTGCCAGTGGGACGTGTTGAGACTGGTGTTGTGAAGCCTGGTATGCTTGTGACTTTTGGTCCCACTGGACTGACAACTGAAGTTAAGTCTGTGGAGATGCACCACGAGGCTCTCCAAGAAGCTCTTCCAGGAGACAATGTTGGATTCAATGTGAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTC 936 0.4605 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMLVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1386 312 Gene3D Translation factors 229 312 - -
Lan20g1386 312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Lan20g1386 312 CDD EF1_alpha_II 230 311 - -
Lan20g1386 312 SUPERFAMILY Translation proteins 228 312 IPR009000 -
Lan20g1386 312 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 312 - -
Lan20g1386 312 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Lan20g1386 312 Pfam Elongation factor Tu domain 2 248 311 IPR004161 GO:0005525
Lan20g1386 312 PANTHER TRANSLATION FACTOR 1 312 - -
Lan20g1386 312 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Lan20g1386 312 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Lan20g1386 312 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Lan20g1386 312 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Lan20g1386 312 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Lan20g1386 312 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Lan20g1386 312 CDD EF1_alpha 9 227 - -
Lan20g1386 312 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
Lan20g1386 312 Gene3D - 1 226 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1386 Lan-Chr20 20594809 20596681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1386 1 312 Eukaryotic Initiation Factors Gene Family AT5G60390 96.795 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1386 K03231 - pvy:116114399 632.484