Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1368 ATGGTTGCTGCAAAGAAAACCAAGAAGACTCATGAGAGCATTAACAATAGGCTCGCTCTTGTGATGAAGAGTGGTAAATATACTTTGGGTTATAAAACTGTTCTCAAATCACTTAGAAGTTCCAAAGGGAAACTCATTATCATTGCCAACAATTGCCCACCCTTGAGGAAATCGGAAATCGAGTATTATGCTATGTTGGCCAAGGTTGGAGTTCACCATTATAATGGGAACAATGTCGATTTAGGTACTGCTTGTGGAAAATATTACAGAGTGTGCTGCCTCAGCATCGTTGATCCTGGTGATTCGGATATCATTAAGACCTTGCCTACCGAGCAGTAA 339 0.4071 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPTEQ* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1368 112 PANTHER RIBOSOMAL PROTEIN L30 1 112 IPR039109 GO:0003723
Lan20g1368 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Lan20g1368 112 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
Lan20g1368 112 Gene3D - 2 108 IPR029064 -
Lan20g1368 112 PANTHER 60S RIBOSOMAL PROTEIN L30 1 112 - -
Lan20g1368 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Lan20g1368 112 Hamap 50S ribosomal protein L30e [rpl30e]. 12 109 IPR000231 GO:0003723|GO:0003735|GO:0022625
Lan20g1368 112 SUPERFAMILY L30e-like 13 106 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1368 Lan-Chr20 20400525 20402145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1368 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 87.500 2.37e-71 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1368 K02908 - gmx:100806260 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0167 5 2009463 2011564 Lan20g1368 20 20400525 20402145 LSH
Lan9g0075 9 551394 553370 Lan20g1368 20 20400525 20402145 PCT
Lan2g0085 2 789355 791518 Lan20g1368 20 20400525 20402145 PCT