Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1354 ATGGAAGCAGAAGAACCTCATCAATCTCACATTTTTCCGATTGAAGATATGAAAAGTGTGGTTGCAACAGTGAGTGGTTACCATGGATTGGAGCGATTTCATCTCATCAAGTTGATTTCGTATTCCGGCGCTAGTTATGTTGGGAGGATGGAATCAAAATCAATCACACACTTGGTTTGTTGGAAATTCGAAGGAAAAAAATTTGATATTGCCCAAAAGCTCAACATAATTGTAGTCAACCACCGATGGATTGAAGATTGCATAAGGGAAGGAAAGCGTGTGCCAGAAGATTCTTATATTTGGCAAAGTGGTCATGAAGCAGGGCCACTGTTACTGAAAGATCCTCCACACACTGTTCAAGCAAATAGCTTGAAAAGGAAGAAAATGATTAGTGACAGGTCATATGATATTGGTTCTGAAAAGCAAACAACTGACTTAAGTTCTGGTAGTCAGCACGTGGAGTTAAATTCTCGTTCTTCTAGTCGATTGCGGAAACAAAAAAGAAATATGTGCAGTGATAATGGAGCTAGTACTGTAGCTGGACCTTCTCATAAAGGAAGAAGGATAGCGAAAAATATTGTAGATGAAGTTGTCTTGGATCCTATCATTTTGGATTTAACCTGGGAAGAGGACCAACTTACCAGAGTAAATAGAGTGCACACTGATGCTGCAGCTACCTCTAGTCATTCTGGTGGTGTCAACAACGAAAATAGTCTTGAAAATAGAGAAGGACCAGATGCCAGATTACATAATCAAAGTGGAGCTGTCAACATAGCTACATATGGCATTGAACAGATAGTTGATTCAAATAATGTATCTACCAATACAAATTCCACTTTGTTTGAAGAAGATTCTTTACCTATGGCACAAACATCAGTTTGTTTTAGTGCTGAGAATTTCACAGATAGTGGTCAGATTGATATTGTTAGTGCTTTACCTACTTCGAAAGAGTTGTCATGTGTTATATGTTTCGAAGAGTACAGCTCTACAAGAGGAATTTTGCCGTGTGGACATCGGTATTGTTATACATGCATCCAGAGTTGGGTTGATCTTAGGACTTCAATGGGAAAAAGTTCAACCTGCCCATTGTGCAAGGCAAGTTTTGTGATGTTCAAGAAAGTTGAGGATGCAGCCACTGGTGATCAAAAAGTATATTCCCAGACAATCCCATCTGGCAAGTCAACCTCAGATATTTTTGTCCGCACGGTTCAAGAATTACCCAATTATGGTTTTGAGTCAGGTGATTGCGTAGTTTGCCGTGGTCGGGAACCTGAGGATCTGCTCCAGAGCTGTGATGTTTGCCGATGCCGAAGAATCCATCTGTATTGCCTGGACCCTCCCTTACTGCCTTGGACATGCAATCACTGCAAGGATCTTAGGAGGCTTTATCACCATCACTCTTATTAG 1407 0.4058 MEAEEPHQSHIFPIEDMKSVVATVSGYHGLERFHLIKLISYSGASYVGRMESKSITHLVCWKFEGKKFDIAQKLNIIVVNHRWIEDCIREGKRVPEDSYIWQSGHEAGPLLLKDPPHTVQANSLKRKKMISDRSYDIGSEKQTTDLSSGSQHVELNSRSSSRLRKQKRNMCSDNGASTVAGPSHKGRRIAKNIVDEVVLDPIILDLTWEEDQLTRVNRVHTDAAATSSHSGGVNNENSLENREGPDARLHNQSGAVNIATYGIEQIVDSNNVSTNTNSTLFEEDSLPMAQTSVCFSAENFTDSGQIDIVSALPTSKELSCVICFEEYSSTRGILPCGHRYCYTCIQSWVDLRTSMGKSSTCPLCKASFVMFKKVEDAATGDQKVYSQTIPSGKSTSDIFVRTVQELPNYGFESGDCVVCRGREPEDLLQSCDVCRCRRIHLYCLDPPLLPWTCNHCKDLRRLYHHHSY* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1354 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 398 IPR013083 -
Lan20g1354 468 MobiDBLite consensus disorder prediction 223 240 - -
Lan20g1354 468 Pfam twin BRCT domain 20 83 IPR001357 -
Lan20g1354 468 ProSiteProfiles BRCT domain profile. 17 101 IPR001357 -
Lan20g1354 468 SUPERFAMILY BRCT domain 17 102 IPR036420 -
Lan20g1354 468 MobiDBLite consensus disorder prediction 223 249 - -
Lan20g1354 468 MobiDBLite consensus disorder prediction 140 157 - -
Lan20g1354 468 PANTHER F5A8.9 PROTEIN 13 133 - -
Lan20g1354 468 PANTHER F5A8.9 PROTEIN 123 465 - -
Lan20g1354 468 SMART BRCT_7 14 91 IPR001357 -
Lan20g1354 468 SUPERFAMILY FYVE/PHD zinc finger 412 457 IPR011011 -
Lan20g1354 468 SUPERFAMILY RING/U-box 309 371 - -
Lan20g1354 468 MobiDBLite consensus disorder prediction 132 184 - -
Lan20g1354 468 Pfam Zinc finger, C3HC4 type (RING finger) 320 364 IPR018957 GO:0046872
Lan20g1354 468 Gene3D BRCT domain 14 106 IPR036420 -
Lan20g1354 468 ProSiteProfiles Zinc finger RING-type profile. 320 365 IPR001841 -
Lan20g1354 468 ProSitePatterns Zinc finger RING-type signature. 336 345 IPR017907 -
Lan20g1354 468 SMART ring_2 320 364 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1354 Lan-Chr20 20257761 20263326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1354 38 99 Core DNA Replication Machinery Family AT4G02110 38.095 2.11e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1354 - - vra:106765083 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0947 8 11196902 11202382 Lan20g1354 20 20257761 20263326 LSH