Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1344 ATGTTGAAGAACAATGGTGTTGGAAGTTCCAACAAGTGGTCACGTGTCTGTGACACGTGCCACTCTGCAGCATGCATAGTGTACTGTCTTGCTGACTCTCTCTACTTGTGCTCACTTTGTGATGCAAAATTTCATGCACCAAATTGTGGGGCTTCATGGCATGAGCGTGTGTGGGTTTGTGAAATTTGTGAAAGTGCTCCTGCAGCTTTTCTATGCAAAGTTGATGCTGCTACTCTTTGCTCTTCTTGTGATGCTCACATCCACAACTCCAACTCTCAAGCTAGCTGCCACCACCGTGTGCCTATTCTCCCTATCATTGGATCTCTCCTTGGTGAAGAACAAGATCATGACATCATAGAATTGAAGCGTGATGGATATGAGGCCGAGAAAAAGGAGGAGGAGGTATTCAATGAAGTTGAAGATGTTGCTGAAGCAGCGTCGTGGTTATTGCCGAATCCGGTGCAGAATAGCGATGAAAATGAAGAGAATAATATAATCTTGTATGGTGATAATAACCAGTTCAGTGGTTCTCAATATAATGATAAGAATAGTTACAGTGTTGTCTCTCAGGAGAAGGAGAACTATGCAGAGGTTATTGTGGTTCCTGTTCAGATTCAACAACAGTCACAGCAGTTTCAACTGGGTTTGGACATTCACTCCTTTGAGTTTGGACTCAGTTGCAATGATTCAAGTCATGATGTGACCCAAATACGATCTAATGTGATTGCATTGTGGCCAGATGCGACTGTTGGCGTTGTACCAGAATCAGCAATGAGTGATGTCTCAATTCCCCACTCAAAACCACTAACAATAGGAACAAGTGACTTATTTCCTCACATTCAAAGGCCCTTTACCACATTGGAGAGAGAGGCTAAAGTTCTAAGGTATAGGGAGAAAAAGAAAACAAGAAAGTTTGAAAAGAAAATCATGTATGCTTCAAGGAAGGCCTATGCAGAAACTAGACCTCGTATAAAAGGTAGATTTGTAAAAGAAACTGATGTAGAAGAAACTGGGTATGGCATTGTTCCTTCAGAGCTATTTATGAATATTCAGCTAAATGGTGAGAAGATAGAAGATAAGAGAAGAGAAGGTTGTGAACAACATCAAATAAGGTTTTAA 1119 0.4111 MLKNNGVGSSNKWSRVCDTCHSAACIVYCLADSLYLCSLCDAKFHAPNCGASWHERVWVCEICESAPAAFLCKVDAATLCSSCDAHIHNSNSQASCHHRVPILPIIGSLLGEEQDHDIIELKRDGYEAEKKEEEVFNEVEDVAEAASWLLPNPVQNSDENEENNIILYGDNNQFSGSQYNDKNSYSVVSQEKENYAEVIVVPVQIQQQSQQFQLGLDIHSFEFGLSCNDSSHDVTQIRSNVIALWPDATVGVVPESAMSDVSIPHSKPLTIGTSDLFPHIQRPFTTLEREAKVLRYREKKKTRKFEKKIMYASRKAYAETRPRIKGRFVKETDVEETGYGIVPSELFMNIQLNGEKIEDKRREGCEQHQIRF* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1344 372 CDD Bbox1_BBX-like 16 59 - -
Lan20g1344 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 5 336 IPR045281 GO:0009909
Lan20g1344 372 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Lan20g1344 372 SMART bboxneu5 60 102 IPR000315 GO:0008270
Lan20g1344 372 SMART bboxneu5 12 59 IPR000315 GO:0008270
Lan20g1344 372 CDD Bbox1_BBX-like 59 102 - -
Lan20g1344 372 Pfam CCT motif 289 331 IPR010402 GO:0005515
Lan20g1344 372 Pfam B-box zinc finger 57 101 IPR000315 GO:0008270
Lan20g1344 372 ProSiteProfiles CCT domain profile. 289 331 IPR010402 GO:0005515
Lan20g1344 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 5 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1344 Lan-Chr20 20118710 20122437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1344 1 344 C2C2-CO-like Transcription Factor Family AT3G02380 43.864 4.86e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan20g1344 zf-B_box 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1344 - - lang:109335543 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g1344 20 20118710 20122437 Lan9g0092 9 737470 739835 PCT
Lan20g1344 20 20118710 20122437 Lan8g0141 8 2372060 2374912 PCT
Lan9g0092 9 737470 739835 Lan20g1344 20 20118710 20122437 PCT
Lan8g0141 8 2372060 2374912 Lan20g1344 20 20118710 20122437 PCT