Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1341 ATGGATCCAATTCTTAACATGTCTCTTTTCCAAGACGAAGAAGAAGAAGAAGAAGAAGAAGATCATCATTCTTATTACCATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAATCTCGCTCCTTTCATCACGATTTCACCATAAACCCCTTTTCCGGCGTCGTTTGCGATCTTCACGGTGAAACCCAATTAGGGTTAGGGTTTGAATTTGAAGCCCAGAATAACAATAATTCACAATCTGGGGGACTCAGGATTGTTGATTTTGGTTCTGATTCGGATTCGGATTCGAGTAGCGAGGATGAGCATGAGATTGATCGGGTTATGGTGAATGATGATGATGATGATGATGATGATGATGATGGTGATGATAGGGTTGGTGGATTCGATGATTTCGATGTTCAATTGTGTTGGGATAGTCTTTGTTTAGAGGATCAAAGGACCCTTAATGAGGGTTTTGAATGGGAGGAGGTAGAAGAGAGGGTTAATGAGATTGAAAATGAGAGAGAAGATTTGAGCTTGGTGATTGATGAAGTTGATATTAATGATGGTGATGATGATGATGATCGATCAGTGGCGTCTGGGTTTTCGAATGTTGATGAACCGAGCGAAGAGGCGCTTAGGTACTTGGAATGGGAAATTCTATTGGCTGTTAATAATTTGGAGAGGAATCCGATTTTGGAACATGATGCCAATGTGGATTCGTATTTGGCGGTTCAGGATGGTTATATATACACAGCTGAATATGATGTTCTTTTCGGGCAGTTTATGGATAACGAGACTGCATTGAAGGGTAGCCCACCTGCCGCGAAAAGTGTTGTGGAAAATCTTCCTGTGGTGGAATTGACGAAGGAGGAGTTGCAGACGAAAAATGTGGCGTGTGCTGTTTGTAAAGATGAGATCTTGTTGGAGGAGAAGGTTAGGAGGCTTCCTTGCTTACATTGTTATCATGGAGACTGCATTATGCCGTGGTTGAGTATCCGCAATACGTGTCCTGTTTGTCGGTTTGAGTTGCCCACTGATGATCCTGATTATGAGCAGAGGAAGAGCCGTCAGCCTTCTAATGATCTGTTGGATTTTGCAACACAGATGCAATTTTGA 1110 0.427 MDPILNMSLFQDEEEEEEEEDHHSYYHSDSDSVSCFVTDLFESRSFHHDFTINPFSGVVCDLHGETQLGLGFEFEAQNNNNSQSGGLRIVDFGSDSDSDSSSEDEHEIDRVMVNDDDDDDDDDDGDDRVGGFDDFDVQLCWDSLCLEDQRTLNEGFEWEEVEERVNEIENEREDLSLVIDEVDINDGDDDDDRSVASGFSNVDEPSEEALRYLEWEILLAVNNLERNPILEHDANVDSYLAVQDGYIYTAEYDVLFGQFMDNETALKGSPPAAKSVVENLPVVELTKEELQTKNVACAVCKDEILLEEKVRRLPCLHCYHGDCIMPWLSIRNTCPVCRFELPTDDPDYEQRKSRQPSNDLLDFATQMQF* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1341 369 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Lan20g1341 369 MobiDBLite consensus disorder prediction 1 30 - -
Lan20g1341 369 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 84 369 - -
Lan20g1341 369 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 25 80 - -
Lan20g1341 369 MobiDBLite consensus disorder prediction 83 129 - -
Lan20g1341 369 MobiDBLite consensus disorder prediction 110 129 - -
Lan20g1341 369 Coils Coil 158 185 - -
Lan20g1341 369 Pfam Ring finger domain 297 338 IPR001841 -
Lan20g1341 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 344 IPR013083 -
Lan20g1341 369 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 84 369 - -
Lan20g1341 369 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 25 80 - -
Lan20g1341 369 SMART ring_2 297 337 IPR001841 -
Lan20g1341 369 SUPERFAMILY RING/U-box 285 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1341 Lan-Chr20 20069143 20070743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1341 215 352 C3H Transcription Factor Family AT5G15820 55.797 4.78e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1341 - - gmx:100812037 370.548