LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan20g1340	ATGTCTAACTCAATCCTCAGCTCTAGTAACCCAATCCCTAGCTCTAGTAACCCAAAGAAGAACAAGGGTCGTAGAAGGATTGAGATGAAAATGATAGCCAAAGACAACAACCTACAAGTCACATTCTCCAAACGCCGCACTAGGCTATTCAAGAAAGCGAGCGAGCTTTGCACTCTTTGTGATGCAAAAGTTTGGCTAGTTGTCTTTTCTCCTACAAACAAGGCTTTCTCCTTTGGCGACCCTAATATTGATGTTGTCATTAATCGGATCAATGAAGAACTTGAGATTGAGAAGAAGTGTAGTGAAGAGTTGGCTAAGCAAAGGAAAGAGGCACAAGAGCGTTTCTGGTGGGCTGCTCCAATTGAAGAGATCAATGGAGAACGAGTTGATCAATTGAAGTCGGCTCTTGAGAATCTGAAGAAGAATGTGGTTGGTGTTGTTGAAAGGCAGAATATTGTTGAGGGTGCTACTGCTGTTGCTGCTGCTATCCCACCTCCTCCTCACTTTTTTACAGGTGGTGCATCTTCTTCAAACAACCCTTTGACACCACCACCTCAGCCACCAACTTAG	570	0.4404	MSNSILSSSNPIPSSSNPKKNKGRRRIEMKMIAKDNNLQVTFSKRRTRLFKKASELCTLCDAKVWLVVFSPTNKAFSFGDPNIDVVINRINEELEIEKKCSEELAKQRKEAQERFWWAAPIEEINGERVDQLKSALENLKKNVVGVVERQNIVEGATAVAAAIPPPPHFFTGGASSSNNPLTPPPQPPT*	190

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan20g1340	189	PANTHER	MADS BOX PROTEIN	21	91	-	-
	Lan20g1340	189	PANTHER	MADS BOX PROTEIN	92	157	-	-
	Lan20g1340	189	MobiDBLite	consensus disorder prediction	1	25	-	-
	Lan20g1340	189	SUPERFAMILY	SRF-like	23	98	IPR036879	GO:0003677\|GO:0046983
	Lan20g1340	189	SMART	madsneu2	22	81	IPR002100	GO:0003677\|GO:0046983
	Lan20g1340	189	ProSiteProfiles	MADS-box domain profile.	22	82	IPR002100	GO:0003677\|GO:0046983
	Lan20g1340	189	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	32	78	IPR002100	GO:0003677\|GO:0046983
	Lan20g1340	189	MobiDBLite	consensus disorder prediction	1	18	-	-
	Lan20g1340	189	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL62	21	91	-	-
	Lan20g1340	189	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL62	92	157	-	-
	Lan20g1340	189	Gene3D	-	35	105	IPR036879	GO:0003677\|GO:0046983
	Lan20g1340	189	Coils	Coil	91	114	-	-
	Lan20g1340	189	MobiDBLite	consensus disorder prediction	167	189	-	-
	Lan20g1340	189	Coils	Coil	129	149	-	-
	Lan20g1340	189	PRINTS	MADS domain signature	24	44	IPR002100	GO:0003677\|GO:0046983
	Lan20g1340	189	PRINTS	MADS domain signature	44	59	IPR002100	GO:0003677\|GO:0046983
	Lan20g1340	189	PRINTS	MADS domain signature	59	80	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan20g1340	Lan-Chr20	20067334	20068002	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan20g1340	19	179	Type I MADS-box Gene Family	AT5G60440	41.117	3.76e-35	123

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Lan20g1340		SRF-TF	5.8e-22	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan20g1340	-		-	lang:109335542	317.005