Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1330 ATGCCGCATCAAGTTTATTTACTTATCATTGGAGTCTCTTTTGGTTTGGCCCTTGGAATTCTGTTTGCTTTCCTCATATTTTTCTTCATGAGTTGCAATATAGAAGACGCTAGTATCAGACGATCTGCTAATGATACTAGTGTAACTAACGATACTAGTGTAACAACTCTTCCGATACGAACAAATGGATTGGAAACGAGCACCGACTTTAGTGCATCTATTACTAGTTCCACAGCCGTGTCAAGGTCAGAAGATGGACAGAAAGATTCCAATTTCAGTTGGTGGAGTCATCAAAGCATAGATCGATTTGCTAAACCATCGGGCATTCTTAAGTACTCATACAAAGAAATTCAAAAGGCCACACAAAATTTCACAACTACATTGGGACAAGGATCTTTTGGCACAGTTTATAAAGCCACAATGCCAACAGGAGAAGTGATAGCTGTGAAGGTGCTTGCATCTAATTCCAAACAAGGGGAGAAAGAATTCCAAACAGAGGTACTTCTGCTAGGAAGGCTGCATCATCGGAATCTTGCGAATTTGGTTGGATATTGTGTAGATAAAGGACACCACATACTGGCTTATCAGTTCATGAGTAATGGAAGTTTAGCGAATCTTCTATATGGTGAAGAAAAGAAATTGAGTTGGGATGAAAGGCTGCAAATTTCTTTTGATATTTCACATGGGATAGAATACCTTCATGAAGGAGCTTCTCCACCCGTCATACATCGTGATTTGAAATGCGCCAACATATTGCTAGATCACTCAATGAGAGCTAAGGTTGCTGATTTTGGGCTCTCAAAGGAAGAGGTATTTGATGGTCGGAATTCTGCGCTTAGAGGTACATATGGCTACATGGATCCAGCATACATTTCCACAAAAAAGTTAACAATGAAGAGCGACATCTACAGTTTCGGTATCATAATCTTCGAGCTCATCACTGCAATCCCCCCACATCAAAATCTGTTGGAATATATTGGCCTTGCTGCAATGGATCATGATGGCATAGATGGGATACTTGACAAGCAACTTGTGGATAACTGCAACATTGGAGAAGTGAGGCAACTTGCTAAAATTGGACACAAATGTTTGCACAAATCACCGAGGAAACGCCCTCCAATTAGTGTAGTTTCACAGTGTATATCAAGGATAAAGCAGAGGCGGCAGCGCCACCACGCGATAGAAGATATCGTGTCACTTGCAAGCAGTAGAGCCGAGTCACTGAGAAGATCGGTAGATTGA 1242 0.4122 MPHQVYLLIIGVSFGLALGILFAFLIFFFMSCNIEDASIRRSANDTSVTNDTSVTTLPIRTNGLETSTDFSASITSSTAVSRSEDGQKDSNFSWWSHQSIDRFAKPSGILKYSYKEIQKATQNFTTTLGQGSFGTVYKATMPTGEVIAVKVLASNSKQGEKEFQTEVLLLGRLHHRNLANLVGYCVDKGHHILAYQFMSNGSLANLLYGEEKKLSWDERLQISFDISHGIEYLHEGASPPVIHRDLKCANILLDHSMRAKVADFGLSKEEVFDGRNSALRGTYGYMDPAYISTKKLTMKSDIYSFGIIIFELITAIPPHQNLLEYIGLAAMDHDGIDGILDKQLVDNCNIGEVRQLAKIGHKCLHKSPRKRPPISVVSQCISRIKQRRQRHHAIEDIVSLASSRAESLRRSVD* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1330 413 CDD STKc_IRAK 128 384 - -
Lan20g1330 413 ProSiteProfiles Protein kinase domain profile. 122 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1330 413 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 404 - -
Lan20g1330 413 PANTHER OS01G0750732 PROTEIN 9 404 - -
Lan20g1330 413 Gene3D Transferase(Phosphotransferase) domain 1 198 405 - -
Lan20g1330 413 SUPERFAMILY Protein kinase-like (PK-like) 103 379 IPR011009 -
Lan20g1330 413 SMART serkin_6 122 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1330 413 ProSitePatterns Protein kinases ATP-binding region signature. 128 150 IPR017441 GO:0005524
Lan20g1330 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Lan20g1330 413 Gene3D Phosphorylase Kinase; domain 1 86 197 - -
Lan20g1330 413 Pfam Protein tyrosine and serine/threonine kinase 124 379 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1330 Lan-Chr20 19922843 19926876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1330 112 393 Receptor kinase-like Gene Family AT2G19210 41.356 2.25e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Lan20g1330 PK_Tyr_Ser-Thr 6.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1330 - - gmx:100819995 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0936 8 11103643 11108251 Lan20g1330 20 19922843 19926876 LSH