Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1323 ATGGGTAGAGGAAGAGTGGAACTGAAAAGAATAGAGAACAAGATAAACAGACAAGTAACATTTGCAAAGAGAAGGAATGGACTTTTGAAGAAAGCTTATGAACTTTCAGTTCTATGTGATGCTGAGGTTGCTCTTATCATCTTCTCCACACGTGGAAAACTCTATGAGTTTTGTAGCTGCACCTCTGGAATGGTCAAAACACTTGAAAGGTACCAAAAATGCAGCTATGGTGCAGTGGAAGTTAACAAGCCTTCCAAAGAGCTTGAGAGTAGCTACCGTGAGTATTTGAAGCTAAAAGCAAGATTTGAGAGTCTTCAAAGGACCCAGAGAAACCTTCTAGGTGAAGACTTGGGCCCATTAAACACCAAAGATCTTGAGCAGCTTGAGAGACAACTGGATTCATCTCTCAAACATGTGAGGTCCACTAAGACCCAATTCATGCTGGACCAGTTATCTGATCTTCAAAACAAGGAGCAAATGCTGGTAGAAACAAATAGAGGTTTGGCCATGAAGCTGGAAGAAATCAATTCAAGAAACCAATACAGACAATGGGATGATGGTGAACAAAGTATGCAATATGATACACAGAATGCTCACTCTCAAGGCTTCTTCCAACCTTTGGAATGCAATCCTACATTGCAGATAGGGTATCATCATGTAGCCCAAGATCAGCTAAATGCAACAACTCAAGCTCAACAAGTGAATGGATTTATACCTGGATGGATGCTTTGA 732 0.4085 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSCTSGMVKTLERYQKCSYGAVEVNKPSKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKDLEQLERQLDSSLKHVRSTKTQFMLDQLSDLQNKEQMLVETNRGLAMKLEEINSRNQYRQWDDGEQSMQYDTQNAHSQGFFQPLECNPTLQIGYHHVAQDQLNATTQAQQVNGFIPGWML* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1323 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Lan20g1323 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan20g1323 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan20g1323 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan20g1323 243 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan20g1323 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan20g1323 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan20g1323 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan20g1323 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan20g1323 243 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lan20g1323 243 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Lan20g1323 243 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lan20g1323 243 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 231 - -
Lan20g1323 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan20g1323 243 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1323 Lan-Chr20 19793587 19799288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1323 1 243 MADS-box Gene Family AT5G15800 71.483 1.06e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan20g1323 K-box 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1323 K09264 - gmx:732643 422.935