Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1322 ATGGGGAGAGGAAGGGTTCAGTTGAAGCAGATCGAGAACAAAACAAGCCGTCAAGTAACGTTTTCAAAGAGAAGATCAGGGTTGAGAAAGAAAGCACATGAAATTTCTGTGCTTTGTGATGCTCAAGTTGCATTGATTGTGTTCAACAACAAAGGCAAACTTTTTGAATTTTCATCTGAAAACAGCATGAAAATCATCCTGGAGCGATATGAGAGACAAAACCATGCAGCTCAACTTGATGGTGCTGATAATGAATCACAGGGAAACTGGTCCTTGGAATGCTTCAAACTTACCAACAAAGTTGAGGTATTGGAGAGGAATTTAAGGAACTATGTGGGACATGATCTTGATCCTTTGAGTTTGAGAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACATAGCTATAAAGCGTGTCAGAAACAAAAAGAACCAACTTATGAATGAATCTATCTCTGAGCTGCATAAAAAGGCAAGGGTATTGCAGGAAGAAAACAACAATCTAGTGAAGAAGATTAAGGAGAAAGAGAAGACACATATAGAAAGTCAACATTGTTGGCCTGAAACTCTAGGCCAAAATTCTTCATCCTTCAACTTATGTCCTCCAAATTTACAATCACCAGAAAGATTGGTTCCTTTTCTAACACTTGGTAGGAGTTTACAAGCATCATTAGAGGAAGTGGCTGAAGCTCAAACTGCTCCTAATAGCAACACTCTGATCCAACCATGGATGCTGCATGCATCATTTTACTAG 750 0.396 MGRGRVQLKQIENKTSRQVTFSKRRSGLRKKAHEISVLCDAQVALIVFNNKGKLFEFSSENSMKIILERYERQNHAAQLDGADNESQGNWSLECFKLTNKVEVLERNLRNYVGHDLDPLSLRELQSLEQQLDIAIKRVRNKKNQLMNESISELHKKARVLQEENNNLVKKIKEKEKTHIESQHCWPETLGQNSSSFNLCPPNLQSPERLVPFLTLGRSLQASLEEVAEAQTAPNSNTLIQPWMLHASFY* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1322 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lan20g1322 249 PANTHER MADS BOX PROTEIN 1 225 - -
Lan20g1322 249 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lan20g1322 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan20g1322 249 Coils Coil 121 177 - -
Lan20g1322 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan20g1322 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan20g1322 249 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lan20g1322 249 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 225 - -
Lan20g1322 249 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan20g1322 249 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan20g1322 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan20g1322 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan20g1322 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan20g1322 249 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1322 Lan-Chr20 19758700 19765291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1322 1 238 MADS-box Gene Family AT1G26310 50.202 5.15e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan20g1322 K-box 9.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1322 K09264 - gmx:100820188 318.161