Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1321 ATGGGTTCTGTTTGTTGTTGTTTCAGTTTTGACGATTTTGAAGATTATGTAAATCCAAATAGTTCTGTGTATAGGAACTGTGTGTGTCTCAGTTGCTTTATACAGAACCTCTTGGCTGTGTATGCAGCAATATTCCGTAGAGGGGAAGTGCATTCAGTTCCTTCATCTCTTCAAGGGGCAGCATCCATGTCCTCTACAGCATCACTTGACAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTACCTTATGATGCAGAGCCCAGGTATTTCCGCTCAAGGCGCGAGAAGGGTTCAAGTCATTTGAACGAGGAATCAGAACCTCTAAGAAGTGATGTAGATATCGATCCAGAATCTTTAAGTTCAGGAGACAAATGGAATGAATGTGCCGGTGAGGATGGATCAAAGGAATATCGTTCCAAGTCCCCACTAAAACTTTCATCAGCAAAATATACAACTGGAGTCGGGGTCGTCTATGCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACCAAAGAGAATCCAAAGATAATGACTAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGGAGTGACAACTGTCCAGTTTGTGGAAAGGTGATGGTATTTGAAGAAACACTTCCTCTTGATTAA 672 0.4196 MGSVCCCFSFDDFEDYVNPNSSVYRNCVCLSCFIQNLLAVYAAIFRRGEVHSVPSSLQGAASMSSTASLDNSLSDMYRSPPRPLPYDAEPRYFRSRREKGSSHLNEESEPLRSDVDIDPESLSSGDKWNECAGEDGSKEYRSKSPLKLSSAKYTTGVGVVYASSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFEETLPLD* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1321 223 SUPERFAMILY RING/U-box 165 216 - -
Lan20g1321 223 Pfam RING-H2 zinc finger domain 165 210 IPR024766 GO:0008270
Lan20g1321 223 SMART ring_2 170 210 IPR001841 -
Lan20g1321 223 MobiDBLite consensus disorder prediction 71 90 - -
Lan20g1321 223 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 219 - -
Lan20g1321 223 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 219 - -
Lan20g1321 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 217 IPR013083 -
Lan20g1321 223 MobiDBLite consensus disorder prediction 97 123 - -
Lan20g1321 223 MobiDBLite consensus disorder prediction 97 145 - -
Lan20g1321 223 ProSiteProfiles Zinc finger RING-type profile. 170 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1321 Lan-Chr20 19748214 19752865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1321 1 218 C3H Transcription Factor Family AT5G38895 58.447 2.32e-94 277