Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1302 ATGGCAACTGCTAAGACCGTGAAAGATGTTTCTCCTCACGAGTTCGTCAAGGCTTATTCCGCTCACCTCAAGCGTTCTGGAAAGATAGAGCTTCCAGAGTGGACAGATATTGTTAAAACTGCAAAGTTTAAGGAGTTGGCTCCCTATGACCCTGACTGGTATTATATTAGAGCCGCCTCCATTGCAAGGAAGATCTACTTGAGGGGTGGCCTTGGCGTTGGTGCCTTTAGGAGGATCTACGGTGGAAGCAAGAGCAATGGAAGTCGTCCTTCACATTTCTGCAAGAGCAGTGGTGGTATTGCACGGCACATTCTTCAACAGCTTGAAATCATCAAAATTGTTGAGATTGACCCCAAAGGAGGTAGGAGAATCACTTCTCATGGACGAAGGGATCTCGATCAAGTTGCTGGGCGAATTGTGATCGCTCCTTGA 432 0.4722 MATAKTVKDVSPHEFVKAYSAHLKRSGKIELPEWTDIVKTAKFKELAPYDPDWYYIRAASIARKIYLRGGLGVGAFRRIYGGSKSNGSRPSHFCKSSGGIARHILQQLEIIKIVEIDPKGGRRITSHGRRDLDQVAGRIVIAP* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1302 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lan20g1302 143 Gene3D - 1 142 IPR036388 -
Lan20g1302 143 PANTHER RIBOSOMAL PROTEIN S19E, WINGED HELIX-TURN-HELIX DNA-BINDING DOMAIN PROTEIN-RELATED 3 143 - -
Lan20g1302 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lan20g1302 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 140 IPR036390 -
Lan20g1302 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lan20g1302 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 143 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1302 Lan-Chr20 19579941 19581525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1302 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 85.315 6.69e-91 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1302 K02966 - fve:101297360 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0127 5 1633122 1636673 Lan20g1302 20 19579941 19581525 LSH
Lan8g0921 8 10943414 10945424 Lan20g1302 20 19579941 19581525 LSH