Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1290 ATGGGTTGCATTAACTCTAAGAATGTGGTTTCTGAATTTTCTTTGCCACCAATTGTTGCTGATCAATATAGTGTAGCTGGTACCATTGTAGAAAGTGGTCATTACCATCATGGTAATCACGGTTCAAGGGCTAATTCCGGAGTGATGGTTTTGTCATCAGAAGAAAGGAAGAAGTTGAAGAAGAACAGCTCAAAGAAAAGTAATGGCTCTTTCAGCTTTCGGAATGGATTCTCAAATCATCGGTATGTGGATGCTGAATTGAATGCTGCTGGTTGGCCACCTTGGTTAACAGCTTCTGCTGCAGAAGCTATTCAAGGATGGATCCCTCTAAAAGCTGATTCTTTTCAGAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTTTTCCAAGCACGCGAAGTTGAAAGTGGGAGGATGTTTGCTCTGAAGAAGGTGCGGTTCGACAACTTACAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACGATTCTTCGTAGGCTCGACCACCCAAACATCATGAAATTGGAGGGTATCATTACTTCCAGACTATCAAACAGCATTTACCTTGTATTTGAATACATGGAGCATGATCTTGCCGGTCTTATATCTCGCCCTGACGTCATGTTCACTGACTCACAGATAAAATGTTACATGATGCAGTTATTGAGTGGAATTGAGCATTGTCACCTACGCGGTATTATGCATCGAGATATTAAAGTATCAAATATCTTAGTGAATAACGAAGGTGTTCTCAAGATAGCAGATTTCGGATTAGCAAATACAATTAGCCCAAATAACAAGCATCCTTTAACCAGCCGTGTAGTGACTCTATGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAGTTATGGAGTATCGGTGGATCTGTGGAGTGTGGGCTGTGTATTTGCAGAACTTTATCTCCATAAGCCTATTCTTAAGGGGAGAACTGAGGTTGAACAGCTGCACAAAATTTTTAAGCTTTGTGGTACACCAACAGATGATTACTGGAAGAAGTTTAAGCTTCCTCATGCAACAATGTTCAAACCTCAGACAACTTACGAAAGCTCTCTCCGGGAGAGGTGCGCAGATTTTCCTGAAACCGCTGTAAGCCTACTTGAGACTTTTCTGTCGATTGACCCCTACAAGCGTGGGACTGCCTCCTCTGCCTTAATGTCTGAGTATTTCAACACCATCCCGGATGCCTGTAGTCCATCAAAACTGCCAAAGTATCCACCTAGCAAAGAAATGGATGCTAAAAATCGGGGAGATTCGTCCAGTAAAAAGACCGGAGGTAAAACGCGAGAGGCTGTAACATCAAGAAGGCAGCAAAGACGAATCTATAATGTTGTTCAAGAACCAAAGAATTTTAACAAAACAGCTTCAAAGGAGAACATTCCTCAGAATAGTGGTAAGGATAAGGATGATGGTAAAGGACATCTTACAAAGGGAAAAGGAGGAGGGGCTATGCATAAAGAGCAACCTAAACACTCAATGGATACATTGTCCGACGCTTCTCAAAATATGAATGTTATCGATAACGTAAAGGGCTATAGTGTACACTCAGGACAAGTCCAACCCCCAGGATCTAGTGGCTTTACATGGGAAAAACGGAGAAAACCGGATGCTTCATCCGCACTATCTGATGGCGAAAGAAGCAAAATTAGTGCATTGGACCCAAACTTTGCGAAAGGCACATATGACTTGACCAGGCAAGCGATTTTGGAACGAAAATATAATGACAATCATGCTCACCAGGATGAGACTTCCCGGCATGTACTACAAAAGCACCAGGCTCAACATGGTCAACCAAAGGTGCAAATGGATTTTGATCCCGCAGAACTGCTAAACGCGCAGGGCTACAAAGAATATGGTGCATATTGGAATGAAAATAGTCTGCGGCATGGTAAATCGAGGTTCGGAAGAGACAAATGA 1944 0.4264 MGCINSKNVVSEFSLPPIVADQYSVAGTIVESGHYHHGNHGSRANSGVMVLSSEERKKLKKNSSKKSNGSFSFRNGFSNHRYVDAELNAAGWPPWLTASAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFQAREVESGRMFALKKVRFDNLQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLISRPDVMFTDSQIKCYMMQLLSGIEHCHLRGIMHRDIKVSNILVNNEGVLKIADFGLANTISPNNKHPLTSRVVTLWYRPPELLMGSTSYGVSVDLWSVGCVFAELYLHKPILKGRTEVEQLHKIFKLCGTPTDDYWKKFKLPHATMFKPQTTYESSLRERCADFPETAVSLLETFLSIDPYKRGTASSALMSEYFNTIPDACSPSKLPKYPPSKEMDAKNRGDSSSKKTGGKTREAVTSRRQQRRIYNVVQEPKNFNKTASKENIPQNSGKDKDDGKGHLTKGKGGGAMHKEQPKHSMDTLSDASQNMNVIDNVKGYSVHSGQVQPPGSSGFTWEKRRKPDASSALSDGERSKISALDPNFAKGTYDLTRQAILERKYNDNHAHQDETSRHVLQKHQAQHGQPKVQMDFDPAELLNAQGYKEYGAYWNENSLRHGKSRFGRDK* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1290 647 MobiDBLite consensus disorder prediction 416 445 - -
Lan20g1290 647 MobiDBLite consensus disorder prediction 471 502 - -
Lan20g1290 647 ProSitePatterns Protein kinases ATP-binding region signature. 121 144 IPR017441 GO:0005524
Lan20g1290 647 MobiDBLite consensus disorder prediction 446 470 - -
Lan20g1290 647 MobiDBLite consensus disorder prediction 406 504 - -
Lan20g1290 647 MobiDBLite consensus disorder prediction 587 610 - -
Lan20g1290 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Lan20g1290 647 Pfam Protein kinase domain 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1290 647 Gene3D Transferase(Phosphotransferase) domain 1 198 438 - -
Lan20g1290 647 MobiDBLite consensus disorder prediction 522 555 - -
Lan20g1290 647 CDD STKc_CDK9_like 115 399 - -
Lan20g1290 647 SMART serkin_6 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1290 647 Gene3D Phosphorylase Kinase; domain 1 102 197 - -
Lan20g1290 647 SUPERFAMILY Protein kinase-like (PK-like) 109 404 IPR011009 -
Lan20g1290 647 PANTHER CYCLIN-DEPENDENT KINASE 35 577 - -
Lan20g1290 647 PANTHER CELL DIVISION PROTEIN KINASE 35 577 - -
Lan20g1290 647 ProSiteProfiles Protein kinase domain profile. 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1290 Lan-Chr20 19470389 19475829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1290 107 425 Core Cell Cycle Gene Families AT5G10270 47.605 6.22e-104 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lan20g1290 Pkinase 5.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1290 - - lang:109347355 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0111 5 1320639 1326050 Lan20g1290 20 19470389 19475829 LSH
Lan8g0910 8 10860023 10865788 Lan20g1290 20 19470389 19475829 LSH