Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1282 ATGGGATCCTTAGGAGTGAGAAAAGGTGCATGGAATAAGTTGGAAGATGACCTTCTCAGAGTGTGTGTGCAACAATATGGGGAAGGAAAATGGCACCTTGTGCCTAAAAGAGCAGGCTTAAATAGATGCCGTAAAAGTTGTAGACTGCGTTGGTTGAATTATCTAGATCCAAATATTAAACGGGGAGAGTTCAATGAAGGAGAAATTGATTTGATGTTAAGATTGCATAAACTTTTGGGAAACAGATGGTCTCTTATTGCTGGAAGACTTCCCGGAAGGACTCCTAATGATGTAAAAAATTATTGGAATTCTTACATTAGGAAGAAGAAATCCTCTCATAAAGAATGTGTTAATACAATGCCAATGGAAACAATAATGGAACCTCACGTTGTAATAAAGCCTCAACCAAGAACTATCTCAAAAACTTCACCATGGTTAAGAGGGAAATCAATTAGGGAAGATCAAAGTGGGAACAAAAAGTGTACTACTAGTGAAGCATGTGTTGATGTTTCATTAGAGTTCAACAATAATTGTTGGAGTACTTTGGTGGAAGACAAGGTAGGCATTGATGAAGACAACACATGTTTGTTGGGTGAAAAAGATAACACACTCCTTCAAGACCTTAATTGGGATGATGAGATTTTTTCATTAACAACAACAGAAATTGAGGATTTTCTTATTGAAGGTCAAACTTGGAGTGATGTTCTTGATTTCTAA 717 0.3668 MGSLGVRKGAWNKLEDDLLRVCVQQYGEGKWHLVPKRAGLNRCRKSCRLRWLNYLDPNIKRGEFNEGEIDLMLRLHKLLGNRWSLIAGRLPGRTPNDVKNYWNSYIRKKKSSHKECVNTMPMETIMEPHVVIKPQPRTISKTSPWLRGKSIREDQSGNKKCTTSEACVDVSLEFNNNCWSTLVEDKVGIDEDNTCLLGEKDNTLLQDLNWDDEIFSLTTTEIEDFLIEGQTWSDVLDF* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1282 238 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Lan20g1282 238 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Lan20g1282 238 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 156 - -
Lan20g1282 238 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Lan20g1282 238 Gene3D - 63 124 - -
Lan20g1282 238 SMART sant 7 57 IPR001005 -
Lan20g1282 238 SMART sant 60 108 IPR001005 -
Lan20g1282 238 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Lan20g1282 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 55 IPR017930 -
Lan20g1282 238 CDD SANT 63 106 IPR001005 -
Lan20g1282 238 CDD SANT 10 55 IPR001005 -
Lan20g1282 238 Gene3D - 8 60 - -
Lan20g1282 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Lan20g1282 238 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 5 156 - -
Lan20g1282 238 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1282 Lan-Chr20 19287543 19291009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1282 5 140 MYB Transcription Factor Family AT1G66370 60.417 3.58e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g1282 Myb_DNA-binding 4.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1282 - K16166 lang:109335100 359.762