Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1279 ATGAAAGGATCCTTAGGTGTGAGAAAAGGTGCATGGAGTAAGGAAGAAGATGACCTTCTAACAGCATGTGTGCAACAATACGGGGAAGGAAAATGGCACCTTGTGCCTAAACAAGCAGGTTTGAACAGATGTCGCAAAAGCTGTAGACTACGATGGTTGAATTATCTAAAGCCAAATATCAATCGCGGGGAGTTTACTCAAGACGAAGTTGATTTGATGTTAAGATTGCACAAACTTTTAGGAAACAGGTGGTCTCTCATTGCTGGAAGACTTCCGGGAAGGACACCTAATGATCTGAAAAACTATTGGAATACTTACATCCGAAAGAAGCTATCCTCTCATAAGGAAGATGTTAATACAAGTCCAAAGGAAACTGTCATGGAACCTCATGTTGTGATAAAGCCTCAACCTAGAACTATCTCAAAAACTTGGCTATGTGTGAGAGGGAAATCGATTAGAGAAGATAAGAGTGGGAACAAAAAGTGCACTACTAGTGAAGCATGTGTTGCTGCTTCATCTAAGTGCAATAATAATTGTTGGGAGACTTTGGTGGAAGACAAGGGAAGCATTGATGAGAACAACACAAATTTTTTGGGTGAGAGAGAAAAGACACTCATTAAAGACTTTAATTGCAGTGAGGAGCTTTCTTTCATCCACAACAACAGAAATTGA 672 0.3988 MKGSLGVRKGAWSKEEDDLLTACVQQYGEGKWHLVPKQAGLNRCRKSCRLRWLNYLKPNINRGEFTQDEVDLMLRLHKLLGNRWSLIAGRLPGRTPNDLKNYWNTYIRKKLSSHKEDVNTSPKETVMEPHVVIKPQPRTISKTWLCVRGKSIREDKSGNKKCTTSEACVAASSKCNNNCWETLVEDKGSIDENNTNFLGEREKTLIKDFNCSEELSFIHNNRN* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1279 223 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Lan20g1279 223 CDD SANT 64 107 IPR001005 -
Lan20g1279 223 Gene3D - 63 130 - -
Lan20g1279 223 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 170 - -
Lan20g1279 223 Gene3D - 9 61 - -
Lan20g1279 223 CDD SANT 11 56 IPR001005 -
Lan20g1279 223 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Lan20g1279 223 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Lan20g1279 223 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Lan20g1279 223 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 170 - -
Lan20g1279 223 SMART sant 8 58 IPR001005 -
Lan20g1279 223 SMART sant 61 109 IPR001005 -
Lan20g1279 223 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Lan20g1279 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Lan20g1279 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1279 Lan-Chr20 19216847 19220213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1279 6 141 MYB Transcription Factor Family AT1G66370 60.140 1.34e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g1279 Myb_DNA-binding 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1279 - K09422 lang:109335100 472.626