Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1278 ATGGAAGGTTCCTCAGGTGTTAAAAAAGGTGCATGGAGTAAGGAGGAAGATGACCTTCTCAGGGCGTGTGTGCAACAATATGGGGAAGGAAAATGGCACCTTGTGCCTAAACGAGCAGGTAATAATAATGTCCACAAAAGCTGTAAACTGAGGTGGATGAATTATCTAAAACCAGATCTAAAAAAGTTTGCTGATGATGAAGTTGAATTGATGATACGTTTACATAATCTTCTGGGAAATAGATGGTCTCTCATTGCTGGAAGGCTTCCAGGAAGAACTTCTAATGATGTGAAAGACTATTGGAATACTCATATTCAAAAGAAGCTATCATCTCAAGATGAAAATATTAATGTAAGACCAAAGGAAATAGTGGCGGAATCTCATGTTGCGATAAAGCCTCAACCTCGAAAAATTTCAACAAAAATGACCTTCTTAATGTATACTGAAGATCATCGTGGTTGGGATTTATGGGAAATGCAGCCACAATTGCAATCATACCTTATTATTGAGACTCCTAAAACGGTGCTTATGGAATGCGTTGTAAATTGTTACTGGGACAAAGAAGAACTGTTCAAACCCAATATATCCAATATGGTTCATGGACCACGCAGATCAGGTTCAAAAACATGGACGATACAGATCTGGCCTTCAGTGCGCGTGCCACCAAGTATGACTTATACACAAACTGTTGAATCGATTAAGCAAGACTTGAGATCTAGGAAGAAGCATAACACAGTGGAGTATGTGAACTTAACTGAGGATTTAGGTTCTGGAGAGATTGAATTCTTCAACAGTGTTGCTGTTCAGATCATAACTGTGTTAGTGCCACTTTCACGCTGGCCCTAA 846 0.3936 MEGSSGVKKGAWSKEEDDLLRACVQQYGEGKWHLVPKRAGNNNVHKSCKLRWMNYLKPDLKKFADDEVELMIRLHNLLGNRWSLIAGRLPGRTSNDVKDYWNTHIQKKLSSQDENINVRPKEIVAESHVAIKPQPRKISTKMTFLMYTEDHRGWDLWEMQPQLQSYLIIETPKTVLMECVVNCYWDKEELFKPNISNMVHGPRRSGSKTWTIQIWPSVRVPPSMTYTQTVESIKQDLRSRKKHNTVEYVNLTEDLGSGEIEFFNSVAVQIITVLVPLSRWP* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1278 281 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 148 - -
Lan20g1278 281 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Lan20g1278 281 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Lan20g1278 281 Pfam Myb-like DNA-binding domain 62 104 IPR001005 -
Lan20g1278 281 SUPERFAMILY Homeodomain-like 6 101 IPR009057 -
Lan20g1278 281 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 148 - -
Lan20g1278 281 CDD SANT 11 56 IPR001005 -
Lan20g1278 281 SMART sant 59 107 IPR001005 -
Lan20g1278 281 SMART sant 8 58 IPR001005 -
Lan20g1278 281 Gene3D - 63 128 - -
Lan20g1278 281 Gene3D - 3 62 - -
Lan20g1278 281 CDD SANT 62 105 IPR001005 -
Lan20g1278 281 ProSiteProfiles Myb-like domain profile. 62 105 IPR001005 -
Lan20g1278 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 109 IPR017930 -
Lan20g1278 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1278 Lan-Chr20 19147143 19153917 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1278 2 141 MYB Transcription Factor Family AT1G66370 55.034 1.62e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g1278 Myb_DNA-binding 3.7e-12 CL0123