Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1272 ATGGAAGGTTCCTCAGGTGTTAAAAAAGGTGCATGGAGTAAGGAGGAGGATGACCTTCTTAGGGCGTGTGTGCAACAATATGGGGAAGGAAAATGGCATCTTGTGCCTAAACGAGCTGGTTTAAACAGATGCCGCAAAAGTTGTAGATTGCGATGGTTAAATTATCTAAAACCAGATATCAAACGGGGAGAGTTTACAGAGGATGAAGTTGATTTGATGATAAGATTGCATAAACTTTTGGGAAATAAATGGACTCTTATTGCTGGAAGGCTTCCCGGAAGAACTGCTAATGATGTGAAAAACTATTGGAATACTCATATTCGTAAGAAGCTATCATCTCAAGATGAAGAAATTAGTTTAAGATCAAAGGAAATAGTGATGAAATCTGATGTTTTGTTAAAGCCACAACCTCTGAAAATTTCAACAGCATGTCTTGCAACTACTTCAGAGTGCAACAAAGTAAATGACACATGCTCCTTGGGTGAGCCTGATTGGATGCTTCTGGAAGACCTTAACTTGGATGAGGATCTAGGTTCATTAACAACAAGTTTTGACGATATTGTTGAGGTAGATCAATGTTGGAGTGATGTTCCCTAA 597 0.3886 MEGSSGVKKGAWSKEEDDLLRACVQQYGEGKWHLVPKRAGLNRCRKSCRLRWLNYLKPDIKRGEFTEDEVDLMIRLHKLLGNKWTLIAGRLPGRTANDVKNYWNTHIRKKLSSQDEEISLRSKEIVMKSDVLLKPQPLKISTACLATTSECNKVNDTCSLGEPDWMLLEDLNLDEDLGSLTTSFDDIVEVDQCWSDVP* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1272 198 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Lan20g1272 198 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Lan20g1272 198 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Lan20g1272 198 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 143 - -
Lan20g1272 198 SMART sant 61 109 IPR001005 -
Lan20g1272 198 SMART sant 8 58 IPR001005 -
Lan20g1272 198 CDD SANT 64 107 IPR001005 -
Lan20g1272 198 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Lan20g1272 198 Gene3D - 63 130 - -
Lan20g1272 198 CDD SANT 11 56 IPR001005 -
Lan20g1272 198 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 143 - -
Lan20g1272 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Lan20g1272 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Lan20g1272 198 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Lan20g1272 198 Gene3D - 8 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1272 Lan-Chr20 18941652 18943795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1272 2 155 MYB Transcription Factor Family AT1G66370 59.006 3.34e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g1272 Myb_DNA-binding 9.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1272 - K16166 lang:109335100 248.44