LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan20g1265	ATGTCTGAAGCTAAAGACCCAGCGATTAAGCTCTTCGGGAAAACGATTCCGGTAACGGATATTTCAACCGGATCTGGTGAATCATTCGAAGCTCCAGTTTCATCTTTTGGTGATGTTGATAAGAATCAAGGTTCTTCTATCAACTGTTCAAATAGAGAAGATGAAAAAGAAGAGAATGAGATTGAGCAGGACACGATGAGAGAAAAACCAACCGAGGATAAGAAGGAACATGTTACCCAAACATCAGAAGAGGTCACCAATGTGGATACAGCGTCAAGATCAGATGAAGCATCTGTAACCCCCTCCATTGATAAAGATGCTACTACATGGGAAACTTCAAGGACTGAAGAAGAACACGGTGAGGATTCACTAGAAAAGACGCTGAAAAAACCGGACAAGATACTGCATTGCCCCCGTTGTAAGAGCATGGACACCAAGTTCTGCTATTTCAACAATTACAATGCCAACCAACCACGTCATTTCTGCAAGAATTGCCAGAGATACTGGACTGCAGGTGGGTCCATGAGGAATGTGCCTGTTGGTGCTGGTCGCCGGAAGAACAAGAACTCCACCACTCACTTTCATCAGATAACTGTCCCTGAAGCAGCACTCCAGAATCCTCAGTTAAATGGTGTCCATCATCCTTCCTTGGAATGTAATGGCACAGTCCTGACATTTGGGTCTGATACACCCATGTGCGAATCTATGCAATCTGTTTTGGCACTTGCTGATAAAACAGTAAACGATTGCACTAGAAATGGATTCAATGGACCAGAAGAACCAATAATTTTTGTTCCGCATATCGGTGAAGAAAAAGGGAACAATAATCCTGATAAATCTTCTGTCACGTCAGCAAAGCCAATGGAAGGTTCAACCATTGACAAGTCCCAAGAACAAGTTCTTCAGAACTTTCTGGGTTTCCCACCTCAAGTTCCCTACTTTTCCAGTGCCCCTTGGCCTTTCCCATGGAACCCAGCTCAGTGGAGCTCTCCTGTACCACCACCGGCCTTTTTCCCGTCAGGATTTACCATACCATTTTATCCTGCTGCTGCTTATTGGGGTTGTACAGTGCCGCCGGGTGCGTGGAACATGAACATCCCATGGCTAGCACAACCGTCATCCCCAAATAGTACAGCGACTGGCTCTGGTCCGAACTCCCCAACCTTGGGTAAACATTCGAGGGAAGAGAACACGGAAAAATCAAATAATGCAGCAGATGGAGATGAACATTGTCAAGGAAATAATAAAGAAAAAAACCTTTGGGTTCCGAAAACATTGAGGATTGATGACCTAGGAGAAGCAGAAAAAAGCTCTATGTGGTCAACTCTTGGGATTGAAATTAATAAGGCAGACTCATTTCCAGGTGGGGGACTCTTTAAAGCATTCCCATCAAAGCGTGATGAGAAAAATCATGCAATTCAAACCTCACCAGTCTTGCAGGCCAATCCAGCAGCATTGTCTCGGTCGATCAACTTTCACGAGTCCTCGTAG	1491	0.4474	MSEAKDPAIKLFGKTIPVTDISTGSGESFEAPVSSFGDVDKNQGSSINCSNREDEKEENEIEQDTMREKPTEDKKEHVTQTSEEVTNVDTASRSDEASVTPSIDKDATTWETSRTEEEHGEDSLEKTLKKPDKILHCPRCKSMDTKFCYFNNYNANQPRHFCKNCQRYWTAGGSMRNVPVGAGRRKNKNSTTHFHQITVPEAALQNPQLNGVHHPSLECNGTVLTFGSDTPMCESMQSVLALADKTVNDCTRNGFNGPEEPIIFVPHIGEEKGNNNPDKSSVTSAKPMEGSTIDKSQEQVLQNFLGFPPQVPYFSSAPWPFPWNPAQWSSPVPPPAFFPSGFTIPFYPAAAYWGCTVPPGAWNMNIPWLAQPSSPNSTATGSGPNSPTLGKHSREENTEKSNNAADGDEHCQGNNKEKNLWVPKTLRIDDLGEAEKSSMWSTLGIEINKADSFPGGGLFKAFPSKRDEKNHAIQTSPVLQANPAALSRSINFHESS*	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan20g1265	496	MobiDBLite	consensus disorder prediction	373	391	-	-
	Lan20g1265	496	MobiDBLite	consensus disorder prediction	50	82	-	-
	Lan20g1265	496	MobiDBLite	consensus disorder prediction	373	418	-	-
	Lan20g1265	496	MobiDBLite	consensus disorder prediction	275	292	-	-
	Lan20g1265	496	MobiDBLite	consensus disorder prediction	1	126	-	-
	Lan20g1265	496	MobiDBLite	consensus disorder prediction	83	108	-	-
	Lan20g1265	496	MobiDBLite	consensus disorder prediction	392	415	-	-
	Lan20g1265	496	MobiDBLite	consensus disorder prediction	109	126	-	-
	Lan20g1265	496	Pfam	Dof domain, zinc finger	132	189	IPR003851	GO:0003677\|GO:0006355
	Lan20g1265	496	MobiDBLite	consensus disorder prediction	268	292	-	-
	Lan20g1265	496	MobiDBLite	consensus disorder prediction	461	480	-	-
	Lan20g1265	496	ProSitePatterns	Zinc finger Dof-type signature.	137	173	IPR003851	GO:0003677\|GO:0006355
	Lan20g1265	496	ProSiteProfiles	Zinc finger Dof-type profile.	135	189	IPR003851	GO:0003677\|GO:0006355
	Lan20g1265	496	PANTHER	CYCLIC DOF FACTOR 2	1	495	IPR045174	GO:0003700\|GO:0006355
	Lan20g1265	496	PANTHER	DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN	1	495	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan20g1265	Lan-Chr20	18758876	18762762	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan20g1265	6	496	C2C2-Dof Transcription Factor Family	AT5G39660	41.586	1.83e-99	305

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-Dof	Lan20g1265		zf-Dof	2.4e-31	No_clan